Hb_003071_020

Information

Type transcription factor
Description TF Family: ARF
Location Contig3071: 20891-29228
Sequence    

Annotation

kegg
ID mtr:MTR_4g124900
description Auxin response factor
nr
ID XP_003609970.1
description Auxin response factor [Medicago truncatula]
swissprot
ID Q8RYC8
description Auxin response factor 19 OS=Arabidopsis thaliana GN=ARF19 PE=1 SV=2
trembl
ID G7JS69
description Auxin response factor OS=Medicago truncatula GN=MTR_4g124900 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin response factor 19-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32439: 20661-26832 , PASA_asmbl_32440: 22375-23630 , PASA_asmbl_32441: 27126-29353
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003071_020 0.0 transcription factor TF Family: ARF Auxin response factor [Medicago truncatula]
2 Hb_000856_180 0.052114681 - - calcium-dependent protein kinase [Hevea brasiliensis]
3 Hb_006922_010 0.0923619024 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]
4 Hb_000236_410 0.0962589957 - - Paramyosin, putative [Ricinus communis]
5 Hb_002046_020 0.0977741837 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
6 Hb_001019_180 0.0988998134 - - PREDICTED: uncharacterized protein LOC105639324 [Jatropha curcas]
7 Hb_001840_090 0.0999499299 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
8 Hb_033772_030 0.1019807782 - - PREDICTED: CST complex subunit CTC1 [Jatropha curcas]
9 Hb_010222_070 0.10258598 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
10 Hb_032808_030 0.1055105876 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
11 Hb_002006_040 0.1056779519 - - PREDICTED: translation initiation factor eIF-2B subunit delta isoform X1 [Jatropha curcas]
12 Hb_009627_030 0.1083269459 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]
13 Hb_000330_040 0.1086312652 - - PREDICTED: protein RER1B-like [Jatropha curcas]
14 Hb_000941_130 0.1088703575 - - gamma-tubulin complex component, putative [Ricinus communis]
15 Hb_005389_160 0.110226908 - - PREDICTED: casein kinase I [Jatropha curcas]
16 Hb_002900_090 0.1103277825 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105646817 [Jatropha curcas]
17 Hb_003752_100 0.1105543414 - - PREDICTED: FRIGIDA-like protein 3 [Jatropha curcas]
18 Hb_000976_210 0.1116636334 - - PREDICTED: protein PAT1 homolog 1 isoform X1 [Jatropha curcas]
19 Hb_000402_190 0.1118657689 - - PREDICTED: F-box protein At1g70590 [Jatropha curcas]
20 Hb_000009_330 0.1123630618 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003071_020 Hb_003071_020 Hb_000856_180 Hb_000856_180 Hb_003071_020--Hb_000856_180 Hb_006922_010 Hb_006922_010 Hb_003071_020--Hb_006922_010 Hb_000236_410 Hb_000236_410 Hb_003071_020--Hb_000236_410 Hb_002046_020 Hb_002046_020 Hb_003071_020--Hb_002046_020 Hb_001019_180 Hb_001019_180 Hb_003071_020--Hb_001019_180 Hb_001840_090 Hb_001840_090 Hb_003071_020--Hb_001840_090 Hb_032808_030 Hb_032808_030 Hb_000856_180--Hb_032808_030 Hb_000856_180--Hb_002046_020 Hb_000905_170 Hb_000905_170 Hb_000856_180--Hb_000905_170 Hb_000856_180--Hb_000236_410 Hb_000009_330 Hb_000009_330 Hb_000856_180--Hb_000009_330 Hb_033772_030 Hb_033772_030 Hb_006922_010--Hb_033772_030 Hb_005000_260 Hb_005000_260 Hb_006922_010--Hb_005000_260 Hb_002900_090 Hb_002900_090 Hb_006922_010--Hb_002900_090 Hb_003370_030 Hb_003370_030 Hb_006922_010--Hb_003370_030 Hb_007163_120 Hb_007163_120 Hb_006922_010--Hb_007163_120 Hb_000739_100 Hb_000739_100 Hb_006922_010--Hb_000739_100 Hb_000236_410--Hb_032808_030 Hb_144744_010 Hb_144744_010 Hb_000236_410--Hb_144744_010 Hb_093084_070 Hb_093084_070 Hb_000236_410--Hb_093084_070 Hb_010712_090 Hb_010712_090 Hb_000236_410--Hb_010712_090 Hb_001055_030 Hb_001055_030 Hb_000236_410--Hb_001055_030 Hb_001935_140 Hb_001935_140 Hb_000236_410--Hb_001935_140 Hb_000487_380 Hb_000487_380 Hb_002046_020--Hb_000487_380 Hb_002046_020--Hb_000236_410 Hb_000941_130 Hb_000941_130 Hb_002046_020--Hb_000941_130 Hb_000025_280 Hb_000025_280 Hb_002046_020--Hb_000025_280 Hb_003078_020 Hb_003078_020 Hb_002046_020--Hb_003078_020 Hb_000330_040 Hb_000330_040 Hb_001019_180--Hb_000330_040 Hb_012799_120 Hb_012799_120 Hb_001019_180--Hb_012799_120 Hb_002110_030 Hb_002110_030 Hb_001019_180--Hb_002110_030 Hb_002890_090 Hb_002890_090 Hb_001019_180--Hb_002890_090 Hb_023226_080 Hb_023226_080 Hb_001019_180--Hb_023226_080 Hb_002006_040 Hb_002006_040 Hb_001019_180--Hb_002006_040 Hb_001840_090--Hb_002900_090 Hb_001840_090--Hb_005000_260 Hb_001840_090--Hb_006922_010 Hb_001840_090--Hb_000739_100 Hb_145880_010 Hb_145880_010 Hb_001840_090--Hb_145880_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1226 25.1159 6.3446 11.2049 8.19041 10.9015
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.27251 8.30696 12.7826 17.288 4.80304

CAGE analysis