Hb_003071_050

Information

Type transcription factor
Description TF Family: ERF
Location Contig3071: 58072-58512
Sequence    

Annotation

kegg
ID rcu:RCOM_0710590
description Transcriptional factor TINY, putative
nr
ID AEK82609.1
description ethylene-responsive element binding protein 2 [Hevea brasiliensis]
swissprot
ID Q9SNE1
description Ethylene-responsive transcription factor ERF011 OS=Arabidopsis thaliana GN=ERF011 PE=2 SV=1
trembl
ID G3CU73
description Ethylene-responsive element binding protein 2 OS=Hevea brasiliensis GN=EREBP2 PE=2 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor erf016-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32446: 58149-58527
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003071_050 0.0 transcription factor TF Family: ERF ethylene-responsive element binding protein 2 [Hevea brasiliensis]
2 Hb_017491_010 0.0831644687 - - PREDICTED: phosphoinositide phosphatase SAC2 isoform X1 [Jatropha curcas]
3 Hb_000260_410 0.1007008483 - - PREDICTED: protein LURP-one-related 8 [Jatropha curcas]
4 Hb_007257_070 0.1059896293 - - PREDICTED: uncharacterized protein LOC105638098 [Jatropha curcas]
5 Hb_007221_040 0.1149706789 - - PREDICTED: probable receptor-like protein kinase At5g24010 isoform X2 [Populus euphratica]
6 Hb_001269_240 0.116236679 - - aquaporin NIP6.1 family protein [Populus trichocarpa]
7 Hb_044653_050 0.1180575338 - - PREDICTED: CTL-like protein DDB_G0274487 isoform X1 [Jatropha curcas]
8 Hb_000818_090 0.1205734747 - - glutamate receptor 3 plant, putative [Ricinus communis]
9 Hb_003581_050 0.1223179263 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-54 [Jatropha curcas]
10 Hb_054926_010 0.1240069083 - - glutamate receptor 2 plant, putative [Ricinus communis]
11 Hb_000574_230 0.1256208922 - - PREDICTED: leucine-rich repeat receptor protein kinase EXS-like isoform X2 [Vitis vinifera]
12 Hb_007894_120 0.1264960936 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase-like isoform X1 [Jatropha curcas]
13 Hb_000434_060 0.1318650994 desease resistance Gene Name: hmm Disease resistance protein RPM1, putative [Ricinus communis]
14 Hb_018134_010 0.1319332063 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ706 isoform X1 [Jatropha curcas]
15 Hb_004228_070 0.1337964033 - - PREDICTED: uncharacterized protein LOC103338699 [Prunus mume]
16 Hb_000270_250 0.1341492252 transcription factor TF Family: MYB hypothetical protein POPTR_0015s07900g [Populus trichocarpa]
17 Hb_007130_020 0.135431753 - - -
18 Hb_004040_010 0.1366470933 - - hypothetical protein POPTR_0019s14250g [Populus trichocarpa]
19 Hb_000500_230 0.137810354 - - hypothetical protein RCOM_0634810 [Ricinus communis]
20 Hb_001789_120 0.1379680614 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_003071_050 Hb_003071_050 Hb_017491_010 Hb_017491_010 Hb_003071_050--Hb_017491_010 Hb_000260_410 Hb_000260_410 Hb_003071_050--Hb_000260_410 Hb_007257_070 Hb_007257_070 Hb_003071_050--Hb_007257_070 Hb_007221_040 Hb_007221_040 Hb_003071_050--Hb_007221_040 Hb_001269_240 Hb_001269_240 Hb_003071_050--Hb_001269_240 Hb_044653_050 Hb_044653_050 Hb_003071_050--Hb_044653_050 Hb_007894_120 Hb_007894_120 Hb_017491_010--Hb_007894_120 Hb_017491_010--Hb_044653_050 Hb_017491_010--Hb_000260_410 Hb_000500_230 Hb_000500_230 Hb_017491_010--Hb_000500_230 Hb_000818_090 Hb_000818_090 Hb_017491_010--Hb_000818_090 Hb_000173_270 Hb_000173_270 Hb_000260_410--Hb_000173_270 Hb_000272_030 Hb_000272_030 Hb_000260_410--Hb_000272_030 Hb_001629_120 Hb_001629_120 Hb_000260_410--Hb_001629_120 Hb_000941_090 Hb_000941_090 Hb_000260_410--Hb_000941_090 Hb_000260_410--Hb_000818_090 Hb_000574_230 Hb_000574_230 Hb_007257_070--Hb_000574_230 Hb_007257_070--Hb_001269_240 Hb_026050_010 Hb_026050_010 Hb_007257_070--Hb_026050_010 Hb_005074_010 Hb_005074_010 Hb_007257_070--Hb_005074_010 Hb_028928_020 Hb_028928_020 Hb_007257_070--Hb_028928_020 Hb_004228_070 Hb_004228_070 Hb_007221_040--Hb_004228_070 Hb_002205_150 Hb_002205_150 Hb_007221_040--Hb_002205_150 Hb_021576_130 Hb_021576_130 Hb_007221_040--Hb_021576_130 Hb_003454_050 Hb_003454_050 Hb_007221_040--Hb_003454_050 Hb_000434_060 Hb_000434_060 Hb_007221_040--Hb_000434_060 Hb_012539_100 Hb_012539_100 Hb_007221_040--Hb_012539_100 Hb_001269_240--Hb_000574_230 Hb_001269_240--Hb_026050_010 Hb_009557_080 Hb_009557_080 Hb_001269_240--Hb_009557_080 Hb_007441_360 Hb_007441_360 Hb_001269_240--Hb_007441_360 Hb_001269_240--Hb_005074_010 Hb_007130_020 Hb_007130_020 Hb_044653_050--Hb_007130_020 Hb_044653_050--Hb_007894_120 Hb_044653_050--Hb_004228_070 Hb_005365_010 Hb_005365_010 Hb_044653_050--Hb_005365_010 Hb_001301_260 Hb_001301_260 Hb_044653_050--Hb_001301_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 7.10425 8.47332 8.47622 0.19943 0.063822
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.261346 0 0.991845 7.81138

CAGE analysis