Hb_003073_040

Information

Type transcription factor
Description TF Family: C2C2-Dof
Location Contig3073: 28011-29175
Sequence    

Annotation

kegg
ID pop:POPTR_0010s21240g
description hypothetical protein
nr
ID XP_011028625.1
description PREDICTED: dof zinc finger protein DOF3.6-like isoform X2 [Populus euphratica]
swissprot
ID Q9M2U1
description Dof zinc finger protein DOF3.6 OS=Arabidopsis thaliana GN=DOF3.6 PE=1 SV=2
trembl
ID A5BZE7
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020749 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dof zinc finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32451: 27639-29247
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003073_040 0.0 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.6-like isoform X2 [Populus euphratica]
2 Hb_000140_220 0.0955120496 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 22 [Jatropha curcas]
3 Hb_132259_010 0.10748746 - - PREDICTED: WAT1-related protein At5g64700 [Jatropha curcas]
4 Hb_000015_230 0.1141324976 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.6-like isoform X2 [Populus euphratica]
5 Hb_115114_010 0.1191415802 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000270_250 0.1196488754 transcription factor TF Family: MYB hypothetical protein POPTR_0015s07900g [Populus trichocarpa]
7 Hb_002030_100 0.1244010928 - - PREDICTED: putative clathrin assembly protein At4g40080 [Jatropha curcas]
8 Hb_003579_010 0.1262174627 - - cryptochrome 1.2 [Populus tremula]
9 Hb_001269_240 0.1328749811 - - aquaporin NIP6.1 family protein [Populus trichocarpa]
10 Hb_009557_080 0.1330232986 - - PREDICTED: glutaredoxin-C9-like [Populus euphratica]
11 Hb_006358_030 0.1347501342 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
12 Hb_004879_030 0.1354308822 - - PREDICTED: uncharacterized protein LOC105124685 [Populus euphratica]
13 Hb_000167_100 0.1367850815 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_006243_010 0.1385652391 - - PREDICTED: cell wall protein IFF6 [Populus euphratica]
15 Hb_004109_150 0.1404987925 - - glutathione-S-transferase tau 1 [Hevea brasiliensis]
16 Hb_000574_230 0.1452716573 - - PREDICTED: leucine-rich repeat receptor protein kinase EXS-like isoform X2 [Vitis vinifera]
17 Hb_000201_010 0.1473898965 - - unnamed protein product [Vitis vinifera]
18 Hb_000032_590 0.1498583032 - - PREDICTED: glutaredoxin domain-containing cysteine-rich protein 1 [Jatropha curcas]
19 Hb_010180_050 0.1526162552 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
20 Hb_003071_050 0.1536343474 transcription factor TF Family: ERF ethylene-responsive element binding protein 2 [Hevea brasiliensis]

Gene co-expression network

sample Hb_003073_040 Hb_003073_040 Hb_000140_220 Hb_000140_220 Hb_003073_040--Hb_000140_220 Hb_132259_010 Hb_132259_010 Hb_003073_040--Hb_132259_010 Hb_000015_230 Hb_000015_230 Hb_003073_040--Hb_000015_230 Hb_115114_010 Hb_115114_010 Hb_003073_040--Hb_115114_010 Hb_000270_250 Hb_000270_250 Hb_003073_040--Hb_000270_250 Hb_002030_100 Hb_002030_100 Hb_003073_040--Hb_002030_100 Hb_003579_010 Hb_003579_010 Hb_000140_220--Hb_003579_010 Hb_000140_220--Hb_115114_010 Hb_009557_080 Hb_009557_080 Hb_000140_220--Hb_009557_080 Hb_000049_290 Hb_000049_290 Hb_000140_220--Hb_000049_290 Hb_004324_220 Hb_004324_220 Hb_000140_220--Hb_004324_220 Hb_132259_010--Hb_115114_010 Hb_132259_010--Hb_000015_230 Hb_004879_030 Hb_004879_030 Hb_132259_010--Hb_004879_030 Hb_132259_010--Hb_000140_220 Hb_000032_590 Hb_000032_590 Hb_132259_010--Hb_000032_590 Hb_000015_230--Hb_115114_010 Hb_000325_070 Hb_000325_070 Hb_000015_230--Hb_000325_070 Hb_000813_090 Hb_000813_090 Hb_000015_230--Hb_000813_090 Hb_000015_230--Hb_000140_220 Hb_001046_040 Hb_001046_040 Hb_115114_010--Hb_001046_040 Hb_115114_010--Hb_004879_030 Hb_044624_010 Hb_044624_010 Hb_115114_010--Hb_044624_010 Hb_115114_010--Hb_000813_090 Hb_000427_040 Hb_000427_040 Hb_000270_250--Hb_000427_040 Hb_032779_010 Hb_032779_010 Hb_000270_250--Hb_032779_010 Hb_000500_230 Hb_000500_230 Hb_000270_250--Hb_000500_230 Hb_004880_050 Hb_004880_050 Hb_000270_250--Hb_004880_050 Hb_001147_030 Hb_001147_030 Hb_000270_250--Hb_001147_030 Hb_006358_030 Hb_006358_030 Hb_002030_100--Hb_006358_030 Hb_004109_150 Hb_004109_150 Hb_002030_100--Hb_004109_150 Hb_036492_020 Hb_036492_020 Hb_002030_100--Hb_036492_020 Hb_002030_100--Hb_000032_590 Hb_000656_260 Hb_000656_260 Hb_002030_100--Hb_000656_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0284464 8.95976 5.62065 6.12421 0.150713 0.180341
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.181373 8.28592

CAGE analysis