Hb_003073_140

Information

Type -
Description -
Location Contig3073: 111311-112522
Sequence    

Annotation

kegg
ID tcc:TCM_028415
description F-box family protein
nr
ID XP_007023958.1
description F-box family protein [Theobroma cacao]
swissprot
ID Q8GXC7
description F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1
trembl
ID A0A061G9M7
description F-box family protein OS=Theobroma cacao GN=TCM_028415 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003073_140 0.0 - - F-box family protein [Theobroma cacao]
2 Hb_010098_070 0.2261877252 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004724_040 0.2284261332 - - PREDICTED: uncharacterized protein LOC105640153 isoform X1 [Jatropha curcas]
4 Hb_000295_120 0.2370880555 - - -
5 Hb_015807_140 0.2371799384 - - small heat-shock protein, putative [Ricinus communis]
6 Hb_006469_060 0.2476925571 - - hypothetical protein POPTR_0005s16470g [Populus trichocarpa]
7 Hb_008066_040 0.2484816648 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL62 [Jatropha curcas]
8 Hb_092272_020 0.2488512181 - - hypothetical protein EUGRSUZ_F00278 [Eucalyptus grandis]
9 Hb_000029_270 0.2495474965 - - PREDICTED: uncharacterized protein LOC105634361 [Jatropha curcas]
10 Hb_009680_050 0.2501813078 - - -
11 Hb_007766_010 0.2515995553 - - hypothetical protein JCGZ_06718 [Jatropha curcas]
12 Hb_002875_080 0.2521032791 - - protein with unknown function [Ricinus communis]
13 Hb_000389_060 0.2530894125 - - PREDICTED: synaptotagmin-3 isoform X1 [Jatropha curcas]
14 Hb_007747_130 0.2545869847 - - PREDICTED: uncharacterized protein LOC105635879 [Jatropha curcas]
15 Hb_100506_010 0.2552090748 - - PREDICTED: uncharacterized protein LOC105133651 isoform X2 [Populus euphratica]
16 Hb_001315_020 0.2558553458 - - ring finger protein, putative [Ricinus communis]
17 Hb_000300_010 0.2560797848 - - multidrug resistance pump, putative [Ricinus communis]
18 Hb_001486_260 0.256832709 - - PREDICTED: uncharacterized protein LOC105632604 [Jatropha curcas]
19 Hb_092706_020 0.2584088508 - - PREDICTED: uncharacterized protein LOC105637876 isoform X1 [Jatropha curcas]
20 Hb_000085_200 0.2612082439 - - ATP synthase subunit H protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_003073_140 Hb_003073_140 Hb_010098_070 Hb_010098_070 Hb_003073_140--Hb_010098_070 Hb_004724_040 Hb_004724_040 Hb_003073_140--Hb_004724_040 Hb_000295_120 Hb_000295_120 Hb_003073_140--Hb_000295_120 Hb_015807_140 Hb_015807_140 Hb_003073_140--Hb_015807_140 Hb_006469_060 Hb_006469_060 Hb_003073_140--Hb_006469_060 Hb_008066_040 Hb_008066_040 Hb_003073_140--Hb_008066_040 Hb_000127_020 Hb_000127_020 Hb_010098_070--Hb_000127_020 Hb_002477_230 Hb_002477_230 Hb_010098_070--Hb_002477_230 Hb_007810_050 Hb_007810_050 Hb_010098_070--Hb_007810_050 Hb_175445_010 Hb_175445_010 Hb_010098_070--Hb_175445_010 Hb_007849_030 Hb_007849_030 Hb_010098_070--Hb_007849_030 Hb_007766_010 Hb_007766_010 Hb_004724_040--Hb_007766_010 Hb_008408_030 Hb_008408_030 Hb_004724_040--Hb_008408_030 Hb_005455_070 Hb_005455_070 Hb_004724_040--Hb_005455_070 Hb_000258_430 Hb_000258_430 Hb_004724_040--Hb_000258_430 Hb_002326_030 Hb_002326_030 Hb_004724_040--Hb_002326_030 Hb_001366_230 Hb_001366_230 Hb_004724_040--Hb_001366_230 Hb_002875_080 Hb_002875_080 Hb_000295_120--Hb_002875_080 Hb_001008_060 Hb_001008_060 Hb_000295_120--Hb_001008_060 Hb_004657_020 Hb_004657_020 Hb_000295_120--Hb_004657_020 Hb_007617_050 Hb_007617_050 Hb_000295_120--Hb_007617_050 Hb_000389_060 Hb_000389_060 Hb_000295_120--Hb_000389_060 Hb_002685_020 Hb_002685_020 Hb_000295_120--Hb_002685_020 Hb_002506_060 Hb_002506_060 Hb_015807_140--Hb_002506_060 Hb_009787_040 Hb_009787_040 Hb_015807_140--Hb_009787_040 Hb_002053_060 Hb_002053_060 Hb_015807_140--Hb_002053_060 Hb_000099_060 Hb_000099_060 Hb_015807_140--Hb_000099_060 Hb_122239_010 Hb_122239_010 Hb_015807_140--Hb_122239_010 Hb_138585_060 Hb_138585_060 Hb_015807_140--Hb_138585_060 Hb_000580_160 Hb_000580_160 Hb_006469_060--Hb_000580_160 Hb_001252_140 Hb_001252_140 Hb_006469_060--Hb_001252_140 Hb_007747_130 Hb_007747_130 Hb_006469_060--Hb_007747_130 Hb_005615_070 Hb_005615_070 Hb_006469_060--Hb_005615_070 Hb_001621_180 Hb_001621_180 Hb_006469_060--Hb_001621_180 Hb_012779_110 Hb_012779_110 Hb_006469_060--Hb_012779_110 Hb_005137_020 Hb_005137_020 Hb_008066_040--Hb_005137_020 Hb_001935_030 Hb_001935_030 Hb_008066_040--Hb_001935_030 Hb_001268_080 Hb_001268_080 Hb_008066_040--Hb_001268_080 Hb_078633_010 Hb_078633_010 Hb_008066_040--Hb_078633_010 Hb_072912_020 Hb_072912_020 Hb_008066_040--Hb_072912_020 Hb_002045_230 Hb_002045_230 Hb_008066_040--Hb_002045_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.135131 0 0 0.0428367 0.0174705 0.052548
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0426097 0.134066 0.0622158 0.0268737 0

CAGE analysis