Hb_003073_210

Information

Type -
Description -
Location Contig3073: 186551-187970
Sequence    

Annotation

kegg
ID fve:101309073
description G-type lectin S-receptor-like serine/threonine-protein kinase RKS1-like
nr
ID KDO38908.1
description hypothetical protein CISIN_1g036722mg, partial [Citrus sinensis]
swissprot
ID Q39688
description Epidermis-specific secreted glycoprotein EP1 OS=Daucus carota GN=EP1 PE=1 SV=1
trembl
ID A0A067D7U5
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g036722mg PE=4 SV=1
Gene Ontology
ID GO:0000166
description s-locus-specific glycoprotein s13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003073_210 0.0 - - hypothetical protein CISIN_1g036722mg, partial [Citrus sinensis]
2 Hb_000270_020 0.1315490143 - - hypothetical protein POPTR_0015s07630g [Populus trichocarpa]
3 Hb_001771_130 0.1377514985 - - PREDICTED: pentatricopeptide repeat-containing protein At2g27610 [Jatropha curcas]
4 Hb_000041_220 0.1416136375 - - polyribonucleotide nucleotidyltransferase, putative [Ricinus communis]
5 Hb_003299_090 0.1441634725 - - hypothetical protein PRUPE_ppa011647mg [Prunus persica]
6 Hb_001584_170 0.1450337832 - - neutral/alkaline invertase [Manihot esculenta]
7 Hb_005839_120 0.1479216461 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
8 Hb_000173_400 0.148421206 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18950 [Jatropha curcas]
9 Hb_000011_080 0.1488701604 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like [Jatropha curcas]
10 Hb_000209_020 0.1490780845 - - PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]
11 Hb_006816_320 0.1494727395 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 16-like [Jatropha curcas]
12 Hb_004734_060 0.1500965022 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
13 Hb_033152_080 0.1527413048 - - RNA-binding protein Nova-1, putative [Ricinus communis]
14 Hb_012016_020 0.1530327746 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105636265 [Jatropha curcas]
15 Hb_002341_030 0.1543292991 - - PREDICTED: transcription factor bHLH140 [Jatropha curcas]
16 Hb_001307_140 0.1546522276 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Jatropha curcas]
17 Hb_000386_030 0.1552719868 - - PREDICTED: uncharacterized protein LOC105629270 [Jatropha curcas]
18 Hb_139859_010 0.1553131928 - - PREDICTED: cell division control protein 48 homolog D-like [Nicotiana sylvestris]
19 Hb_001437_180 0.1558417123 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
20 Hb_002046_040 0.1567458175 - - PREDICTED: topless-related protein 4 [Malus domestica]

Gene co-expression network

sample Hb_003073_210 Hb_003073_210 Hb_000270_020 Hb_000270_020 Hb_003073_210--Hb_000270_020 Hb_001771_130 Hb_001771_130 Hb_003073_210--Hb_001771_130 Hb_000041_220 Hb_000041_220 Hb_003073_210--Hb_000041_220 Hb_003299_090 Hb_003299_090 Hb_003073_210--Hb_003299_090 Hb_001584_170 Hb_001584_170 Hb_003073_210--Hb_001584_170 Hb_005839_120 Hb_005839_120 Hb_003073_210--Hb_005839_120 Hb_000347_150 Hb_000347_150 Hb_000270_020--Hb_000347_150 Hb_000575_080 Hb_000575_080 Hb_000270_020--Hb_000575_080 Hb_000270_020--Hb_003299_090 Hb_001307_140 Hb_001307_140 Hb_000270_020--Hb_001307_140 Hb_139859_010 Hb_139859_010 Hb_000270_020--Hb_139859_010 Hb_001437_180 Hb_001437_180 Hb_001771_130--Hb_001437_180 Hb_000011_080 Hb_000011_080 Hb_001771_130--Hb_000011_080 Hb_001871_040 Hb_001871_040 Hb_001771_130--Hb_001871_040 Hb_004734_060 Hb_004734_060 Hb_001771_130--Hb_004734_060 Hb_001943_010 Hb_001943_010 Hb_001771_130--Hb_001943_010 Hb_000386_030 Hb_000386_030 Hb_001771_130--Hb_000386_030 Hb_006816_320 Hb_006816_320 Hb_000041_220--Hb_006816_320 Hb_002046_040 Hb_002046_040 Hb_000041_220--Hb_002046_040 Hb_000398_190 Hb_000398_190 Hb_000041_220--Hb_000398_190 Hb_000284_210 Hb_000284_210 Hb_000041_220--Hb_000284_210 Hb_000236_370 Hb_000236_370 Hb_000041_220--Hb_000236_370 Hb_009620_040 Hb_009620_040 Hb_000041_220--Hb_009620_040 Hb_005635_010 Hb_005635_010 Hb_003299_090--Hb_005635_010 Hb_005914_090 Hb_005914_090 Hb_003299_090--Hb_005914_090 Hb_003299_090--Hb_000347_150 Hb_003299_090--Hb_001307_140 Hb_012016_020 Hb_012016_020 Hb_003299_090--Hb_012016_020 Hb_003878_140 Hb_003878_140 Hb_001584_170--Hb_003878_140 Hb_000865_080 Hb_000865_080 Hb_001584_170--Hb_000865_080 Hb_001584_170--Hb_004734_060 Hb_000224_060 Hb_000224_060 Hb_001584_170--Hb_000224_060 Hb_012395_160 Hb_012395_160 Hb_001584_170--Hb_012395_160 Hb_002977_010 Hb_002977_010 Hb_001584_170--Hb_002977_010 Hb_000953_010 Hb_000953_010 Hb_005839_120--Hb_000953_010 Hb_000173_400 Hb_000173_400 Hb_005839_120--Hb_000173_400 Hb_010710_010 Hb_010710_010 Hb_005839_120--Hb_010710_010 Hb_000358_080 Hb_000358_080 Hb_005839_120--Hb_000358_080 Hb_002810_020 Hb_002810_020 Hb_005839_120--Hb_002810_020 Hb_000490_030 Hb_000490_030 Hb_005839_120--Hb_000490_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.662685 0.830355 0.160597 0.0433518 0.790121 1.80596
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.350303 0.505047 0.586847 0.648157 0.0931112

CAGE analysis