Hb_003077_020

Information

Type -
Description -
Location Contig3077: 18340-21546
Sequence    

Annotation

kegg
ID fve:101300537
description ABC transporter I family member 10, chloroplastic-like
nr
ID AIU41659.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q8H1R4
description ABC transporter I family member 10, chloroplastic OS=Arabidopsis thaliana GN=ABCI10 PE=2 SV=1
trembl
ID A0A097P9R3
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCI10 PE=2 SV=1
Gene Ontology
ID GO:0005215
description abc transporter i family member chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32490: 18352-21538
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003077_020 0.0 - - ABC transporter family protein [Hevea brasiliensis]
2 Hb_146673_010 0.078684928 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
3 Hb_018133_020 0.0825629995 - - transporter, putative [Ricinus communis]
4 Hb_004157_020 0.0842941094 - - PREDICTED: histone H2B-like [Gossypium raimondii]
5 Hb_012114_070 0.0875782909 - - PREDICTED: uncharacterized protein LOC105645812 [Jatropha curcas]
6 Hb_000599_260 0.0878815088 - - Vacuolar protein sorting-associated protein 2 like 3 [Glycine soja]
7 Hb_003728_060 0.0896891513 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4-like [Jatropha curcas]
8 Hb_000633_020 0.0905663025 - - PREDICTED: uncharacterized protein LOC105630002 [Jatropha curcas]
9 Hb_001322_110 0.0922162132 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000465_090 0.0928815065 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
11 Hb_004440_020 0.0941725162 - - AP-3 complex subunit sigma-1, putative [Ricinus communis]
12 Hb_001318_260 0.0954448055 - - PREDICTED: nitrogen regulatory protein P-II homolog [Jatropha curcas]
13 Hb_000137_040 0.0957766104 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
14 Hb_000413_240 0.0967682965 - - PREDICTED: transcription factor ILR3-like isoform X2 [Jatropha curcas]
15 Hb_002946_190 0.0991287089 - - PREDICTED: nudix hydrolase 26, chloroplastic [Jatropha curcas]
16 Hb_000261_020 0.0992648858 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic [Jatropha curcas]
17 Hb_001279_080 0.0994207573 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105140180 isoform X1 [Populus euphratica]
18 Hb_004096_090 0.1000735561 - - Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative [Ricinus communis]
19 Hb_002871_190 0.1006543405 - - PREDICTED: uncharacterized protein LOC105628867 [Jatropha curcas]
20 Hb_000976_120 0.1008930683 - - PREDICTED: DNA polymerase zeta processivity subunit [Jatropha curcas]

Gene co-expression network

sample Hb_003077_020 Hb_003077_020 Hb_146673_010 Hb_146673_010 Hb_003077_020--Hb_146673_010 Hb_018133_020 Hb_018133_020 Hb_003077_020--Hb_018133_020 Hb_004157_020 Hb_004157_020 Hb_003077_020--Hb_004157_020 Hb_012114_070 Hb_012114_070 Hb_003077_020--Hb_012114_070 Hb_000599_260 Hb_000599_260 Hb_003077_020--Hb_000599_260 Hb_003728_060 Hb_003728_060 Hb_003077_020--Hb_003728_060 Hb_000633_020 Hb_000633_020 Hb_146673_010--Hb_000633_020 Hb_002477_300 Hb_002477_300 Hb_146673_010--Hb_002477_300 Hb_000465_090 Hb_000465_090 Hb_146673_010--Hb_000465_090 Hb_002946_190 Hb_002946_190 Hb_146673_010--Hb_002946_190 Hb_000731_160 Hb_000731_160 Hb_146673_010--Hb_000731_160 Hb_131181_010 Hb_131181_010 Hb_018133_020--Hb_131181_010 Hb_026053_020 Hb_026053_020 Hb_018133_020--Hb_026053_020 Hb_001279_080 Hb_001279_080 Hb_018133_020--Hb_001279_080 Hb_001318_260 Hb_001318_260 Hb_018133_020--Hb_001318_260 Hb_018133_020--Hb_012114_070 Hb_000840_180 Hb_000840_180 Hb_018133_020--Hb_000840_180 Hb_004889_020 Hb_004889_020 Hb_004157_020--Hb_004889_020 Hb_004410_080 Hb_004410_080 Hb_004157_020--Hb_004410_080 Hb_004157_020--Hb_018133_020 Hb_004157_020--Hb_000633_020 Hb_000676_390 Hb_000676_390 Hb_004157_020--Hb_000676_390 Hb_026889_030 Hb_026889_030 Hb_004157_020--Hb_026889_030 Hb_003038_240 Hb_003038_240 Hb_012114_070--Hb_003038_240 Hb_000155_200 Hb_000155_200 Hb_012114_070--Hb_000155_200 Hb_000614_220 Hb_000614_220 Hb_012114_070--Hb_000614_220 Hb_000614_160 Hb_000614_160 Hb_012114_070--Hb_000614_160 Hb_012114_070--Hb_004157_020 Hb_001931_010 Hb_001931_010 Hb_000599_260--Hb_001931_010 Hb_002307_180 Hb_002307_180 Hb_000599_260--Hb_002307_180 Hb_002171_060 Hb_002171_060 Hb_000599_260--Hb_002171_060 Hb_000505_130 Hb_000505_130 Hb_000599_260--Hb_000505_130 Hb_001472_100 Hb_001472_100 Hb_000599_260--Hb_001472_100 Hb_012565_070 Hb_012565_070 Hb_000599_260--Hb_012565_070 Hb_004162_130 Hb_004162_130 Hb_003728_060--Hb_004162_130 Hb_000375_350 Hb_000375_350 Hb_003728_060--Hb_000375_350 Hb_002871_190 Hb_002871_190 Hb_003728_060--Hb_002871_190 Hb_050514_010 Hb_050514_010 Hb_003728_060--Hb_050514_010 Hb_000260_030 Hb_000260_030 Hb_003728_060--Hb_000260_030 Hb_003728_060--Hb_026889_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.45424 2.62517 8.11943 4.72221 3.80922 5.09297
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.61871 10.0258 5.26133 2.04564 6.48082

CAGE analysis