Hb_003077_040

Information

Type -
Description -
Location Contig3077: 81254-84531
Sequence    

Annotation

kegg
ID rcu:RCOM_0174590
description hypothetical protein
nr
ID XP_012093084.1
description PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
swissprot
ID Q641J8
description E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a PE=1 SV=1
trembl
ID A0A067LJJ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16297 PE=4 SV=1
Gene Ontology
ID GO:0003824
description e3 ubiquitin-protein ligase rlim-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32491: 81294-84515
cDNA
(Sanger)
(ID:Location)		 008_C13.ab1: 81294-82894 , 029_P08.ab1: 81296-83888

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003077_040 0.0 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
2 Hb_001484_070 0.0720111908 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000103_010 0.0762614825 - - 20S proteasome beta subunit D2 [Hevea brasiliensis]
4 Hb_001085_120 0.0765297699 - - PREDICTED: UV radiation resistance-associated gene protein isoform X1 [Jatropha curcas]
5 Hb_000261_140 0.0816184078 - - -
6 Hb_000086_280 0.0819382747 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3-like [Gossypium raimondii]
7 Hb_000453_120 0.0845134359 - - PREDICTED: proteasome subunit alpha type-3 [Jatropha curcas]
8 Hb_004375_140 0.0855038228 - - PREDICTED: nicotinamide adenine dinucleotide transporter 1, chloroplastic [Jatropha curcas]
9 Hb_007441_040 0.0864426365 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
10 Hb_157022_010 0.0889001575 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
11 Hb_011628_040 0.089250705 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
12 Hb_094608_010 0.0898003451 - - PREDICTED: uncharacterized protein LOC105630444 isoform X3 [Jatropha curcas]
13 Hb_000608_310 0.0901469179 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_001396_100 0.090590325 - - DNA binding protein, putative [Ricinus communis]
15 Hb_000102_020 0.0907515808 - - hypothetical protein JCGZ_11933 [Jatropha curcas]
16 Hb_000638_250 0.0923868074 - - WD-repeat protein, putative [Ricinus communis]
17 Hb_005731_170 0.0932518571 - - hypothetical protein PRUPE_ppa011750mg [Prunus persica]
18 Hb_001123_130 0.0938176765 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
19 Hb_001776_160 0.0938266152 - - 20S proteasome alpha subunit G1 [Theobroma cacao]
20 Hb_001979_040 0.0938740049 - - PREDICTED: 60S ribosomal protein L21-1-like [Gossypium raimondii]

Gene co-expression network

sample Hb_003077_040 Hb_003077_040 Hb_001484_070 Hb_001484_070 Hb_003077_040--Hb_001484_070 Hb_000103_010 Hb_000103_010 Hb_003077_040--Hb_000103_010 Hb_001085_120 Hb_001085_120 Hb_003077_040--Hb_001085_120 Hb_000261_140 Hb_000261_140 Hb_003077_040--Hb_000261_140 Hb_000086_280 Hb_000086_280 Hb_003077_040--Hb_000086_280 Hb_000453_120 Hb_000453_120 Hb_003077_040--Hb_000453_120 Hb_000920_110 Hb_000920_110 Hb_001484_070--Hb_000920_110 Hb_001484_070--Hb_000453_120 Hb_001484_070--Hb_000261_140 Hb_001979_040 Hb_001979_040 Hb_001484_070--Hb_001979_040 Hb_001484_070--Hb_001085_120 Hb_002056_050 Hb_002056_050 Hb_001484_070--Hb_002056_050 Hb_000193_120 Hb_000193_120 Hb_000103_010--Hb_000193_120 Hb_000103_010--Hb_001085_120 Hb_000181_300 Hb_000181_300 Hb_000103_010--Hb_000181_300 Hb_004375_140 Hb_004375_140 Hb_000103_010--Hb_004375_140 Hb_005181_030 Hb_005181_030 Hb_000103_010--Hb_005181_030 Hb_001085_120--Hb_000453_120 Hb_001512_080 Hb_001512_080 Hb_001085_120--Hb_001512_080 Hb_001776_160 Hb_001776_160 Hb_001085_120--Hb_001776_160 Hb_000417_360 Hb_000417_360 Hb_001085_120--Hb_000417_360 Hb_010175_040 Hb_010175_040 Hb_000261_140--Hb_010175_040 Hb_001123_130 Hb_001123_130 Hb_000261_140--Hb_001123_130 Hb_000261_140--Hb_000920_110 Hb_000638_250 Hb_000638_250 Hb_000261_140--Hb_000638_250 Hb_004143_150 Hb_004143_150 Hb_000261_140--Hb_004143_150 Hb_000086_280--Hb_001085_120 Hb_000086_280--Hb_001776_160 Hb_000086_280--Hb_000638_250 Hb_000086_280--Hb_000261_140 Hb_000240_090 Hb_000240_090 Hb_000086_280--Hb_000240_090 Hb_000086_280--Hb_000453_120 Hb_000453_120--Hb_001512_080 Hb_002110_200 Hb_002110_200 Hb_000453_120--Hb_002110_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.9932 9.24062 26.2833 14.7157 16.4378 24.7892
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.4845 59.3733 44.9893 19.0361 11.3673

CAGE analysis