Hb_003077_050

Information

Type -
Description -
Location Contig3077: 89639-92678
Sequence    

Annotation

kegg
ID rcu:RCOM_0174580
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_012093082.1
description PREDICTED: probable protein phosphatase 2C 63 [Jatropha curcas]
swissprot
ID O81760
description Probable protein phosphatase 2C 63 OS=Arabidopsis thaliana GN=At4g33920 PE=2 SV=1
trembl
ID A0A067LB50
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16296 PE=3 SV=1
Gene Ontology
ID GO:0005622
description probable protein phosphatase 2c 63

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32493: 89647-92646 , PASA_asmbl_32494: 91213-91394
cDNA
(Sanger)
(ID:Location)		 005_F17.ab1: 89705-91620

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003077_050 0.0 - - PREDICTED: probable protein phosphatase 2C 63 [Jatropha curcas]
2 Hb_000069_330 0.0886675842 - - protein with unknown function [Ricinus communis]
3 Hb_004117_170 0.1103761424 - - PREDICTED: probable receptor-like protein kinase At3g55450 [Jatropha curcas]
4 Hb_000077_390 0.1207695415 transcription factor TF Family: ERF hypothetical protein POPTR_0019s13330g [Populus trichocarpa]
5 Hb_002685_200 0.1239126529 - - PREDICTED: uncharacterized protein LOC105632583 [Jatropha curcas]
6 Hb_001484_020 0.1325491238 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
7 Hb_000186_200 0.1364747839 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
8 Hb_004108_240 0.1373721674 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
9 Hb_002701_210 0.137689593 - - Protein COBRA precursor, putative [Ricinus communis]
10 Hb_000045_260 0.1425362669 - - protein with unknown function [Ricinus communis]
11 Hb_007007_080 0.1428968674 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003581_280 0.143958784 - - KINASE 2B family protein [Populus trichocarpa]
13 Hb_000345_500 0.1441298327 - - PREDICTED: peroxisomal adenine nucleotide carrier 1 [Jatropha curcas]
14 Hb_003224_030 0.144198754 - - hypothetical protein POPTR_0077s002402g, partial [Populus trichocarpa]
15 Hb_012107_010 0.1474293632 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
16 Hb_002053_130 0.1474734139 - - UDP-glucose 4-epimerase, putative [Ricinus communis]
17 Hb_001376_010 0.1481380223 - - diacylglycerol kinase, alpha, putative [Ricinus communis]
18 Hb_000035_050 0.1486457978 - - PREDICTED: probable CCR4-associated factor 1 homolog 7 [Jatropha curcas]
19 Hb_007253_010 0.149844829 - - syntaxin, putative [Ricinus communis]
20 Hb_018790_050 0.1503200325 - - hypothetical protein CICLE_v10017858mg [Citrus clementina]

Gene co-expression network

sample Hb_003077_050 Hb_003077_050 Hb_000069_330 Hb_000069_330 Hb_003077_050--Hb_000069_330 Hb_004117_170 Hb_004117_170 Hb_003077_050--Hb_004117_170 Hb_000077_390 Hb_000077_390 Hb_003077_050--Hb_000077_390 Hb_002685_200 Hb_002685_200 Hb_003077_050--Hb_002685_200 Hb_001484_020 Hb_001484_020 Hb_003077_050--Hb_001484_020 Hb_000186_200 Hb_000186_200 Hb_003077_050--Hb_000186_200 Hb_000009_200 Hb_000009_200 Hb_000069_330--Hb_000009_200 Hb_007007_080 Hb_007007_080 Hb_000069_330--Hb_007007_080 Hb_001898_130 Hb_001898_130 Hb_000069_330--Hb_001898_130 Hb_000069_330--Hb_004117_170 Hb_005714_100 Hb_005714_100 Hb_000069_330--Hb_005714_100 Hb_000035_050 Hb_000035_050 Hb_004117_170--Hb_000035_050 Hb_013358_020 Hb_013358_020 Hb_004117_170--Hb_013358_020 Hb_018790_050 Hb_018790_050 Hb_004117_170--Hb_018790_050 Hb_007253_010 Hb_007253_010 Hb_004117_170--Hb_007253_010 Hb_000749_070 Hb_000749_070 Hb_004117_170--Hb_000749_070 Hb_001376_010 Hb_001376_010 Hb_004117_170--Hb_001376_010 Hb_000077_390--Hb_001484_020 Hb_000976_280 Hb_000976_280 Hb_000077_390--Hb_000976_280 Hb_127311_010 Hb_127311_010 Hb_000077_390--Hb_127311_010 Hb_013241_010 Hb_013241_010 Hb_000077_390--Hb_013241_010 Hb_000042_330 Hb_000042_330 Hb_000077_390--Hb_000042_330 Hb_000179_240 Hb_000179_240 Hb_002685_200--Hb_000179_240 Hb_001638_030 Hb_001638_030 Hb_002685_200--Hb_001638_030 Hb_012634_020 Hb_012634_020 Hb_002685_200--Hb_012634_020 Hb_002701_210 Hb_002701_210 Hb_002685_200--Hb_002701_210 Hb_000084_240 Hb_000084_240 Hb_002685_200--Hb_000084_240 Hb_001484_020--Hb_000976_280 Hb_011631_010 Hb_011631_010 Hb_001484_020--Hb_011631_010 Hb_000019_040 Hb_000019_040 Hb_001484_020--Hb_000019_040 Hb_001484_020--Hb_013241_010 Hb_000186_200--Hb_002701_210 Hb_000186_200--Hb_000084_240 Hb_003078_030 Hb_003078_030 Hb_000186_200--Hb_003078_030 Hb_001009_090 Hb_001009_090 Hb_000186_200--Hb_001009_090 Hb_000045_260 Hb_000045_260 Hb_000186_200--Hb_000045_260 Hb_000163_230 Hb_000163_230 Hb_000186_200--Hb_000163_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.5565 361.608 176.205 137.42 15.435 27.315
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
64.5062 51.2405 87.1679 30.1893 48.5566

CAGE analysis