Hb_003077_120

Information

Type -
Description -
Location Contig3077: 192328-192723
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003077_120 0.0 - - -
2 Hb_000261_360 0.2380117194 - - unknown [Lotus japonicus]
3 Hb_000331_500 0.2437418369 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
4 Hb_147123_010 0.2480244629 - - Chorismate mutase, chloroplast precursor, putative [Ricinus communis]
5 Hb_136765_010 0.2521035215 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like isoform X2 [Jatropha curcas]
6 Hb_004243_010 0.2557234273 - - hypothetical protein JCGZ_01580 [Jatropha curcas]
7 Hb_000253_030 0.2607263731 - - hypothetical protein JCGZ_23039 [Jatropha curcas]
8 Hb_002379_040 0.2671512228 - - -
9 Hb_010068_100 0.2728736535 - - PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Jatropha curcas]
10 Hb_007545_050 0.2763849364 - - -
11 Hb_000994_110 0.2773346678 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000107_140 0.277847564 - - -
13 Hb_002639_070 0.2800805939 - - PREDICTED: uncharacterized protein LOC105635265 [Jatropha curcas]
14 Hb_012305_040 0.2808962604 - - PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A-like [Jatropha curcas]
15 Hb_010504_030 0.282248077 - - calmodulin homolog {EST} [Brassica napus, Naehan, root, Peptide Partial, 53 aa]
16 Hb_002228_100 0.285023062 - - calcineurin-like phosphoesterase [Manihot esculenta]
17 Hb_059978_010 0.2908179898 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
18 Hb_001824_020 0.2915995225 - - nucleotide binding protein, putative [Ricinus communis]
19 Hb_005367_010 0.2928452954 - - -
20 Hb_000176_120 0.2930199609 - - seryl-tRNA synthetase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003077_120 Hb_003077_120 Hb_000261_360 Hb_000261_360 Hb_003077_120--Hb_000261_360 Hb_000331_500 Hb_000331_500 Hb_003077_120--Hb_000331_500 Hb_147123_010 Hb_147123_010 Hb_003077_120--Hb_147123_010 Hb_136765_010 Hb_136765_010 Hb_003077_120--Hb_136765_010 Hb_004243_010 Hb_004243_010 Hb_003077_120--Hb_004243_010 Hb_000253_030 Hb_000253_030 Hb_003077_120--Hb_000253_030 Hb_000265_130 Hb_000265_130 Hb_000261_360--Hb_000265_130 Hb_010504_030 Hb_010504_030 Hb_000261_360--Hb_010504_030 Hb_000176_120 Hb_000176_120 Hb_000261_360--Hb_000176_120 Hb_000001_040 Hb_000001_040 Hb_000261_360--Hb_000001_040 Hb_166480_010 Hb_166480_010 Hb_000261_360--Hb_166480_010 Hb_008277_030 Hb_008277_030 Hb_000261_360--Hb_008277_030 Hb_002141_020 Hb_002141_020 Hb_000331_500--Hb_002141_020 Hb_000331_500--Hb_136765_010 Hb_000107_140 Hb_000107_140 Hb_000331_500--Hb_000107_140 Hb_003376_170 Hb_003376_170 Hb_000331_500--Hb_003376_170 Hb_004662_010 Hb_004662_010 Hb_000331_500--Hb_004662_010 Hb_042404_010 Hb_042404_010 Hb_000331_500--Hb_042404_010 Hb_000025_100 Hb_000025_100 Hb_147123_010--Hb_000025_100 Hb_121550_010 Hb_121550_010 Hb_147123_010--Hb_121550_010 Hb_008442_010 Hb_008442_010 Hb_147123_010--Hb_008442_010 Hb_007545_050 Hb_007545_050 Hb_147123_010--Hb_007545_050 Hb_000048_090 Hb_000048_090 Hb_147123_010--Hb_000048_090 Hb_147123_010--Hb_000265_130 Hb_068922_010 Hb_068922_010 Hb_136765_010--Hb_068922_010 Hb_136765_010--Hb_002141_020 Hb_012867_010 Hb_012867_010 Hb_136765_010--Hb_012867_010 Hb_010068_100 Hb_010068_100 Hb_136765_010--Hb_010068_100 Hb_004241_040 Hb_004241_040 Hb_136765_010--Hb_004241_040 Hb_005054_070 Hb_005054_070 Hb_004243_010--Hb_005054_070 Hb_004243_010--Hb_004241_040 Hb_000529_100 Hb_000529_100 Hb_004243_010--Hb_000529_100 Hb_012305_040 Hb_012305_040 Hb_004243_010--Hb_012305_040 Hb_144898_010 Hb_144898_010 Hb_004243_010--Hb_144898_010 Hb_004243_010--Hb_000176_120 Hb_000253_030--Hb_010068_100 Hb_163599_010 Hb_163599_010 Hb_000253_030--Hb_163599_010 Hb_000253_030--Hb_136765_010 Hb_155541_010 Hb_155541_010 Hb_000253_030--Hb_155541_010 Hb_003551_010 Hb_003551_010 Hb_000253_030--Hb_003551_010 Hb_008667_040 Hb_008667_040 Hb_000253_030--Hb_008667_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.824982 0 0 2.28792 1.3856 2.99626
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.23665 1.47147 0 0 0

CAGE analysis