Hb_003077_130

Information

Type -
Description -
Location Contig3077: 194020-196494
Sequence    

Annotation

kegg
ID rcu:RCOM_0810720
description pentatricopeptide repeat-containing protein, putative
nr
ID KDP26230.1
description hypothetical protein JCGZ_22476 [Jatropha curcas]
swissprot
ID Q9LYZ9
description Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
trembl
ID A0A067K1X1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22476 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32496: 193899-195075 , PASA_asmbl_32499: 196148-196367
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003077_130 0.0 - - hypothetical protein JCGZ_22476 [Jatropha curcas]
2 Hb_024714_080 0.0663617748 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
3 Hb_000069_490 0.0915235794 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000997_140 0.0946753063 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
5 Hb_004785_070 0.0995166146 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
6 Hb_028707_110 0.1005695186 - - PREDICTED: uncharacterized protein LOC105645798 [Jatropha curcas]
7 Hb_010757_030 0.1179842149 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_003029_140 0.1216452557 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
9 Hb_078477_060 0.1235512614 - - PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
10 Hb_003878_080 0.124357438 - - PREDICTED: uncharacterized protein LOC105637045 [Jatropha curcas]
11 Hb_003427_080 0.1250154449 - - PREDICTED: probable alanine--tRNA ligase, chloroplastic [Jatropha curcas]
12 Hb_166127_030 0.1270069113 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_002681_080 0.127470955 - - PREDICTED: uncharacterized protein LOC105633817 isoform X1 [Jatropha curcas]
14 Hb_010984_010 0.1282324945 - - PREDICTED: translation factor GUF1 homolog, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_001437_120 0.1296120124 - - PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Jatropha curcas]
16 Hb_001250_020 0.1326182876 - - PREDICTED: CRS2-associated factor 2, chloroplastic [Jatropha curcas]
17 Hb_000053_120 0.1353006078 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
18 Hb_002740_190 0.1356372447 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Jatropha curcas]
19 Hb_000803_240 0.1400312942 - - hypothetical protein CICLE_v100143612mg, partial [Citrus clementina]
20 Hb_016760_010 0.1403297522 - - ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_003077_130 Hb_003077_130 Hb_024714_080 Hb_024714_080 Hb_003077_130--Hb_024714_080 Hb_000069_490 Hb_000069_490 Hb_003077_130--Hb_000069_490 Hb_000997_140 Hb_000997_140 Hb_003077_130--Hb_000997_140 Hb_004785_070 Hb_004785_070 Hb_003077_130--Hb_004785_070 Hb_028707_110 Hb_028707_110 Hb_003077_130--Hb_028707_110 Hb_010757_030 Hb_010757_030 Hb_003077_130--Hb_010757_030 Hb_024714_080--Hb_000069_490 Hb_024714_080--Hb_004785_070 Hb_003878_080 Hb_003878_080 Hb_024714_080--Hb_003878_080 Hb_024714_080--Hb_028707_110 Hb_024714_080--Hb_000997_140 Hb_000069_490--Hb_003878_080 Hb_000069_490--Hb_028707_110 Hb_000069_490--Hb_010757_030 Hb_000069_490--Hb_000997_140 Hb_000997_140--Hb_028707_110 Hb_003029_140 Hb_003029_140 Hb_000997_140--Hb_003029_140 Hb_003929_220 Hb_003929_220 Hb_000997_140--Hb_003929_220 Hb_018043_020 Hb_018043_020 Hb_000997_140--Hb_018043_020 Hb_001250_020 Hb_001250_020 Hb_000997_140--Hb_001250_020 Hb_004785_070--Hb_000069_490 Hb_002276_070 Hb_002276_070 Hb_004785_070--Hb_002276_070 Hb_001437_120 Hb_001437_120 Hb_004785_070--Hb_001437_120 Hb_004785_070--Hb_010757_030 Hb_028707_110--Hb_001437_120 Hb_028707_110--Hb_010757_030 Hb_028707_110--Hb_003929_220 Hb_010757_030--Hb_003878_080 Hb_006846_080 Hb_006846_080 Hb_010757_030--Hb_006846_080 Hb_010757_030--Hb_003029_140 Hb_016760_010 Hb_016760_010 Hb_010757_030--Hb_016760_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.78434 7.98153 9.18572 6.36321 5.74961 5.32157
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.85797 1.81317 2.38427 6.10105 46.8062

CAGE analysis