Hb_003077_150

Information

Type transcription factor
Description TF Family: SWI/SNF-BAF60b
Location Contig3077: 200634-203170
Sequence    

Annotation

kegg
ID rcu:RCOM_0810700
description brg-1 associated factor, putative
nr
ID XP_002518650.1
description brg-1 associated factor, putative [Ricinus communis]
swissprot
ID O74503
description Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spp27 PE=1 SV=1
trembl
ID B9RY66
description Brg-1 associated factor, putative OS=Ricinus communis GN=RCOM_0810700 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32504: 200667-203160 , PASA_asmbl_32505: 201865-202404
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003077_150 0.0 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
2 Hb_009771_060 0.1051656318 - - PREDICTED: 30S ribosomal protein S31, chloroplastic [Populus euphratica]
3 Hb_001329_090 0.1061215972 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000905_120 0.1083948578 - - PREDICTED: uncharacterized protein LOC105628677 [Jatropha curcas]
5 Hb_000413_060 0.1098772669 - - PREDICTED: DAG protein, chloroplastic [Populus euphratica]
6 Hb_000975_240 0.1123213059 - - hypothetical protein JCGZ_22006 [Jatropha curcas]
7 Hb_003556_030 0.1125685502 - - PREDICTED: uncharacterized oxidoreductase C663.09c isoform X1 [Jatropha curcas]
8 Hb_001541_110 0.1253136244 - - PREDICTED: sufE-like protein 2, chloroplastic isoform X2 [Jatropha curcas]
9 Hb_011053_010 0.1410572704 - - PREDICTED: uncharacterized protein LOC105631146 [Jatropha curcas]
10 Hb_004129_090 0.1416580736 - - PREDICTED: uncharacterized protein LOC105646039 [Jatropha curcas]
11 Hb_007451_040 0.14184956 - - PREDICTED: uncharacterized protein LOC105643411 [Jatropha curcas]
12 Hb_007263_010 0.1420761547 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
13 Hb_000975_220 0.149500856 - - Histone H2B [Medicago truncatula]
14 Hb_000163_100 0.1511221037 - - PREDICTED: uncharacterized protein LOC105642537 [Jatropha curcas]
15 Hb_000035_240 0.1534918488 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002972_010 0.154002172 - - PREDICTED: magnesium-dependent phosphatase 1 [Jatropha curcas]
17 Hb_001488_030 0.15510525 - - biotin carboxyl carrier protein [Vernicia fordii]
18 Hb_021576_080 0.1561485603 - - PREDICTED: BTB/POZ domain-containing protein NPY1 [Jatropha curcas]
19 Hb_000390_090 0.1582069687 - - PREDICTED: uncharacterized protein LOC105632476 [Jatropha curcas]
20 Hb_118282_010 0.1583067171 - - PREDICTED: uncharacterized protein LOC105108358 [Populus euphratica]

Gene co-expression network

sample Hb_003077_150 Hb_003077_150 Hb_009771_060 Hb_009771_060 Hb_003077_150--Hb_009771_060 Hb_001329_090 Hb_001329_090 Hb_003077_150--Hb_001329_090 Hb_000905_120 Hb_000905_120 Hb_003077_150--Hb_000905_120 Hb_000413_060 Hb_000413_060 Hb_003077_150--Hb_000413_060 Hb_000975_240 Hb_000975_240 Hb_003077_150--Hb_000975_240 Hb_003556_030 Hb_003556_030 Hb_003077_150--Hb_003556_030 Hb_007263_010 Hb_007263_010 Hb_009771_060--Hb_007263_010 Hb_002194_050 Hb_002194_050 Hb_009771_060--Hb_002194_050 Hb_005332_080 Hb_005332_080 Hb_009771_060--Hb_005332_080 Hb_007451_040 Hb_007451_040 Hb_009771_060--Hb_007451_040 Hb_000152_180 Hb_000152_180 Hb_009771_060--Hb_000152_180 Hb_001329_090--Hb_003556_030 Hb_001541_110 Hb_001541_110 Hb_001329_090--Hb_001541_110 Hb_000035_240 Hb_000035_240 Hb_001329_090--Hb_000035_240 Hb_001329_090--Hb_000905_120 Hb_001329_090--Hb_000413_060 Hb_000905_120--Hb_007263_010 Hb_000905_120--Hb_001541_110 Hb_000905_120--Hb_003556_030 Hb_000905_120--Hb_000413_060 Hb_000905_120--Hb_007451_040 Hb_000163_100 Hb_000163_100 Hb_000413_060--Hb_000163_100 Hb_000413_060--Hb_003556_030 Hb_000413_240 Hb_000413_240 Hb_000413_060--Hb_000413_240 Hb_000390_090 Hb_000390_090 Hb_000413_060--Hb_000390_090 Hb_011053_010 Hb_011053_010 Hb_000413_060--Hb_011053_010 Hb_000413_060--Hb_001541_110 Hb_010080_010 Hb_010080_010 Hb_000975_240--Hb_010080_010 Hb_000975_240--Hb_009771_060 Hb_000975_240--Hb_011053_010 Hb_000975_240--Hb_000413_060 Hb_011386_050 Hb_011386_050 Hb_000975_240--Hb_011386_050 Hb_003556_030--Hb_000413_240 Hb_003556_030--Hb_000390_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.5579 15.8757 123.863 21.9023 11.5023 18.6965
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.349 49.4776 15.4658 10.5311 36.343

CAGE analysis