Hb_003078_050

Information

Type -
Description -
Location Contig3078: 82762-84507
Sequence    

Annotation

kegg
ID rcu:RCOM_0379110
description serine/threonine protein kinase, putative (EC:2.7.11.13)
nr
ID XP_012085095.1
description PREDICTED: serine/threonine-protein kinase OXI1 [Jatropha curcas]
swissprot
ID Q9LSF1
description Serine/threonine-protein kinase OXI1 OS=Arabidopsis thaliana GN=OXI1 PE=1 SV=1
trembl
ID A0A067LA62
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15132 PE=4 SV=1
Gene Ontology
ID GO:0004697
description serine threonine-protein kinase oxi1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32519: 82824-84484
cDNA
(Sanger)
(ID:Location)		 011_P24.ab1: 82873-83689 , 052_E17.ab1: 82873-83725

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003078_050 0.0 - - PREDICTED: serine/threonine-protein kinase OXI1 [Jatropha curcas]
2 Hb_000634_070 0.0879540119 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
3 Hb_000069_230 0.111605351 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH13-like [Jatropha curcas]
4 Hb_028207_040 0.1170458485 - - PREDICTED: beta-hexosaminidase 2 [Jatropha curcas]
5 Hb_003097_100 0.1173616001 - - probable glycerol-3-phosphate dehydrogenase [NAD(+)] 1, cytosolic [Jatropha curcas]
6 Hb_000258_380 0.1288844223 - - PREDICTED: F-box/kelch-repeat protein SKIP11-like [Jatropha curcas]
7 Hb_001205_030 0.1306638872 transcription factor TF Family: zf-HD hypothetical protein POPTR_0007s12970g [Populus trichocarpa]
8 Hb_010921_030 0.1363533887 transcription factor TF Family: PHD PREDICTED: PHD finger protein At2g01810 [Jatropha curcas]
9 Hb_000483_040 0.1426827466 - - Cell division protein ftsH, putative [Ricinus communis]
10 Hb_012760_010 0.1446932959 - - PREDICTED: uncharacterized protein At4g08330, chloroplastic [Jatropha curcas]
11 Hb_001525_010 0.1466734342 - - PREDICTED: uncharacterized protein LOC105638298 [Jatropha curcas]
12 Hb_000953_050 0.1484666894 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
13 Hb_001369_570 0.1508385305 - - hypothetical protein JCGZ_26236 [Jatropha curcas]
14 Hb_000056_170 0.1575077748 - - conserved hypothetical protein [Ricinus communis]
15 Hb_022693_050 0.1589334785 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
16 Hb_000256_130 0.1604225055 - - hypothetical protein 21 [Hevea brasiliensis]
17 Hb_001268_390 0.1669918453 - - PREDICTED: uncharacterized protein LOC105108367 isoform X1 [Populus euphratica]
18 Hb_000987_060 0.1719214979 - - PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]
19 Hb_001950_030 0.1731948591 - - PREDICTED: F-box protein SKIP2 [Jatropha curcas]
20 Hb_009838_060 0.1750143258 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003078_050 Hb_003078_050 Hb_000634_070 Hb_000634_070 Hb_003078_050--Hb_000634_070 Hb_000069_230 Hb_000069_230 Hb_003078_050--Hb_000069_230 Hb_028207_040 Hb_028207_040 Hb_003078_050--Hb_028207_040 Hb_003097_100 Hb_003097_100 Hb_003078_050--Hb_003097_100 Hb_000258_380 Hb_000258_380 Hb_003078_050--Hb_000258_380 Hb_001205_030 Hb_001205_030 Hb_003078_050--Hb_001205_030 Hb_000634_070--Hb_003097_100 Hb_000634_070--Hb_000069_230 Hb_000953_050 Hb_000953_050 Hb_000634_070--Hb_000953_050 Hb_000634_070--Hb_001205_030 Hb_000634_070--Hb_028207_040 Hb_000069_230--Hb_003097_100 Hb_000069_230--Hb_028207_040 Hb_004597_010 Hb_004597_010 Hb_000069_230--Hb_004597_010 Hb_001525_010 Hb_001525_010 Hb_000069_230--Hb_001525_010 Hb_028207_040--Hb_000953_050 Hb_028207_040--Hb_001525_010 Hb_003120_050 Hb_003120_050 Hb_028207_040--Hb_003120_050 Hb_001369_570 Hb_001369_570 Hb_028207_040--Hb_001369_570 Hb_003097_100--Hb_028207_040 Hb_022693_050 Hb_022693_050 Hb_003097_100--Hb_022693_050 Hb_003728_040 Hb_003728_040 Hb_003097_100--Hb_003728_040 Hb_000056_170 Hb_000056_170 Hb_000258_380--Hb_000056_170 Hb_000258_380--Hb_000634_070 Hb_000258_380--Hb_003097_100 Hb_010921_030 Hb_010921_030 Hb_000258_380--Hb_010921_030 Hb_000258_380--Hb_001525_010 Hb_001205_030--Hb_010921_030 Hb_000925_160 Hb_000925_160 Hb_001205_030--Hb_000925_160 Hb_000345_200 Hb_000345_200 Hb_001205_030--Hb_000345_200 Hb_126380_010 Hb_126380_010 Hb_001205_030--Hb_126380_010 Hb_189208_020 Hb_189208_020 Hb_001205_030--Hb_189208_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.2083 145.419 18.0521 26.0027 21.4894 14.5107
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.2748 30.6127 40.9663 12.1346 10.6951

CAGE analysis