Hb_003078_060

Information

Type -
Description -
Location Contig3078: 95423-97577
Sequence    

Annotation

kegg
ID rcu:RCOM_0379000
description 60S ribosomal protein L32, putative
nr
ID XP_002533495.1
description 60S ribosomal protein L32, putative [Ricinus communis]
swissprot
ID P49211
description 60S ribosomal protein L32-1 OS=Arabidopsis thaliana GN=RPL32A PE=2 SV=2
trembl
ID B9T5H6
description 60S ribosomal protein L32, putative OS=Ricinus communis GN=RCOM_0379000 PE=4 SV=1
Gene Ontology
ID GO:0005622
description 60s ribosomal protein l32-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32521: 95157-98205
cDNA
(Sanger)
(ID:Location)		 002_K13.ab1: 95236-98209 , 003_M23.ab1: 95308-98204 , 004_G13.ab1: 95299-98209 , 020_D12.ab1: 95308-98204 , 020_J23.ab1: 95329-98204 , 021_D19.ab1: 95294-98205 , 028_A05.ab1: 95349-98204 , 032_I14.ab1: 95335-98204 , 045_H08.ab1: 95294-98205 , 053_I01.ab1: 95299-98209

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003078_060 0.0 - - 60S ribosomal protein L32, putative [Ricinus communis]
2 Hb_000139_490 0.2192959841 - - PREDICTED: transcription factor MUTE [Jatropha curcas]
3 Hb_157022_030 0.238149452 transcription factor TF Family: NF-YB ccaat-binding transcription factor subunit A, putative [Ricinus communis]
4 Hb_004162_230 0.2424526984 - - PREDICTED: histone H2B [Jatropha curcas]
5 Hb_000926_230 0.2464225391 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005679_080 0.2487097974 - - PREDICTED: PH-interacting protein-like [Populus euphratica]
7 Hb_001431_110 0.2625024234 - - glycerol-3-phosphate transporter family protein [Populus trichocarpa]
8 Hb_002411_060 0.2724325376 - - PREDICTED: 65-kDa microtubule-associated protein 5 [Jatropha curcas]
9 Hb_009393_190 0.2755372359 - - PREDICTED: E3 ubiquitin-protein ligase AIP2-like [Jatropha curcas]
10 Hb_001016_010 0.2757527289 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000568_060 0.2847404998 - - PREDICTED: uncharacterized protein LOC105650906 [Jatropha curcas]
12 Hb_001454_070 0.284830983 - - Uveal autoantigen with coiled-coil domains and ankyrin repeats isoform 1 [Theobroma cacao]
13 Hb_000950_070 0.2848799015 - - PREDICTED: uncharacterized protein LOC105645259 isoform X2 [Jatropha curcas]
14 Hb_164255_010 0.2850659873 - - PREDICTED: aspartate-semialdehyde dehydrogenase [Jatropha curcas]
15 Hb_001005_160 0.2860348226 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003927_120 0.2866207147 - - PREDICTED: ankyrin repeat-containing protein At5g02620 [Jatropha curcas]
17 Hb_009620_090 0.2895877029 - - hypothetical protein L484_000980 [Morus notabilis]
18 Hb_000948_200 0.291716338 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
19 Hb_000959_310 0.2925382948 - - PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]
20 Hb_003750_070 0.2929605092 - - PREDICTED: psbQ-like protein 3, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003078_060 Hb_003078_060 Hb_000139_490 Hb_000139_490 Hb_003078_060--Hb_000139_490 Hb_157022_030 Hb_157022_030 Hb_003078_060--Hb_157022_030 Hb_004162_230 Hb_004162_230 Hb_003078_060--Hb_004162_230 Hb_000926_230 Hb_000926_230 Hb_003078_060--Hb_000926_230 Hb_005679_080 Hb_005679_080 Hb_003078_060--Hb_005679_080 Hb_001431_110 Hb_001431_110 Hb_003078_060--Hb_001431_110 Hb_000139_490--Hb_157022_030 Hb_000139_490--Hb_000926_230 Hb_000139_490--Hb_004162_230 Hb_002411_060 Hb_002411_060 Hb_000139_490--Hb_002411_060 Hb_000029_100 Hb_000029_100 Hb_000139_490--Hb_000029_100 Hb_157022_030--Hb_004162_230 Hb_001329_190 Hb_001329_190 Hb_157022_030--Hb_001329_190 Hb_000556_130 Hb_000556_130 Hb_157022_030--Hb_000556_130 Hb_000663_070 Hb_000663_070 Hb_157022_030--Hb_000663_070 Hb_004449_040 Hb_004449_040 Hb_157022_030--Hb_004449_040 Hb_004162_230--Hb_002411_060 Hb_002307_020 Hb_002307_020 Hb_004162_230--Hb_002307_020 Hb_036790_030 Hb_036790_030 Hb_004162_230--Hb_036790_030 Hb_000739_270 Hb_000739_270 Hb_004162_230--Hb_000739_270 Hb_010998_050 Hb_010998_050 Hb_004162_230--Hb_010998_050 Hb_009620_090 Hb_009620_090 Hb_000926_230--Hb_009620_090 Hb_001005_160 Hb_001005_160 Hb_000926_230--Hb_001005_160 Hb_089140_120 Hb_089140_120 Hb_000926_230--Hb_089140_120 Hb_001545_050 Hb_001545_050 Hb_000926_230--Hb_001545_050 Hb_074836_010 Hb_074836_010 Hb_000926_230--Hb_074836_010 Hb_000731_230 Hb_000731_230 Hb_005679_080--Hb_000731_230 Hb_073973_030 Hb_073973_030 Hb_005679_080--Hb_073973_030 Hb_003902_060 Hb_003902_060 Hb_005679_080--Hb_003902_060 Hb_028341_010 Hb_028341_010 Hb_005679_080--Hb_028341_010 Hb_078568_010 Hb_078568_010 Hb_005679_080--Hb_078568_010 Hb_000679_120 Hb_000679_120 Hb_001431_110--Hb_000679_120 Hb_003750_070 Hb_003750_070 Hb_001431_110--Hb_003750_070 Hb_005489_030 Hb_005489_030 Hb_001431_110--Hb_005489_030 Hb_000321_080 Hb_000321_080 Hb_001431_110--Hb_000321_080 Hb_004545_020 Hb_004545_020 Hb_001431_110--Hb_004545_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.11393 0.0488515 0.953029 0.405368 0 0.472662
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.266674 0.419008 0 0.130593 0

CAGE analysis