Hb_003078_070

Information

Type -
Description -
Location Contig3078: 106018-118970
Sequence    

Annotation

kegg
ID rcu:RCOM_0318360
description dopamine beta-monooxygenase, putative
nr
ID XP_012085056.1
description PREDICTED: cytochrome b561 and DOMON domain-containing protein At3g25290 [Jatropha curcas]
swissprot
ID Q9LSE7
description Cytochrome b561 and DOMON domain-containing protein At3g25290 OS=Arabidopsis thaliana GN=At3g25290 PE=2 SV=1
trembl
ID A0A067LDI3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15128 PE=4 SV=1
Gene Ontology
ID GO:0016021
description auxin-responsive family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32523: 106048-106947 , PASA_asmbl_32524: 116564-118970
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003078_070 0.0 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At3g25290 [Jatropha curcas]
2 Hb_000985_140 0.0831718863 - - PREDICTED: uncharacterized protein LOC105643381 isoform X3 [Jatropha curcas]
3 Hb_021254_020 0.0864899118 - - calmodulin binding protein, putative [Ricinus communis]
4 Hb_000172_410 0.0871449922 - - metal ion binding protein, putative [Ricinus communis]
5 Hb_004837_200 0.0880516336 - - hypothetical protein POPTR_0001s26450g [Populus trichocarpa]
6 Hb_000071_090 0.088732715 - - PREDICTED: probable protein phosphatase 2C 4 [Jatropha curcas]
7 Hb_000836_420 0.0971680567 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
8 Hb_001369_670 0.1067800202 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
9 Hb_004393_030 0.1075179978 - - CBL-interacting protein kinase 6 [Populus trichocarpa]
10 Hb_001247_160 0.1080612114 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
11 Hb_189208_060 0.1106337277 - - PREDICTED: two-pore potassium channel 5 [Jatropha curcas]
12 Hb_001623_410 0.1138763551 - - PREDICTED: beta-amylase 1, chloroplastic [Jatropha curcas]
13 Hb_000032_090 0.1141943317 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001660_130 0.1152271121 - - PREDICTED: serine/threonine-protein kinase-like protein CCR4 [Jatropha curcas]
15 Hb_002374_030 0.1166570112 - - PREDICTED: probable receptor-like protein kinase At1g11050 isoform X1 [Jatropha curcas]
16 Hb_001254_020 0.1187672006 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
17 Hb_002936_030 0.1204632124 - - PREDICTED: uncharacterized protein LOC105633479 isoform X1 [Jatropha curcas]
18 Hb_004109_240 0.1205753615 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
19 Hb_008810_030 0.1242695302 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
20 Hb_001019_020 0.1245865877 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003078_070 Hb_003078_070 Hb_000985_140 Hb_000985_140 Hb_003078_070--Hb_000985_140 Hb_021254_020 Hb_021254_020 Hb_003078_070--Hb_021254_020 Hb_000172_410 Hb_000172_410 Hb_003078_070--Hb_000172_410 Hb_004837_200 Hb_004837_200 Hb_003078_070--Hb_004837_200 Hb_000071_090 Hb_000071_090 Hb_003078_070--Hb_000071_090 Hb_000836_420 Hb_000836_420 Hb_003078_070--Hb_000836_420 Hb_004393_030 Hb_004393_030 Hb_000985_140--Hb_004393_030 Hb_000985_140--Hb_021254_020 Hb_001247_160 Hb_001247_160 Hb_000985_140--Hb_001247_160 Hb_000032_090 Hb_000032_090 Hb_000985_140--Hb_000032_090 Hb_000985_140--Hb_000071_090 Hb_021254_020--Hb_004393_030 Hb_004109_240 Hb_004109_240 Hb_021254_020--Hb_004109_240 Hb_008810_030 Hb_008810_030 Hb_021254_020--Hb_008810_030 Hb_001660_130 Hb_001660_130 Hb_021254_020--Hb_001660_130 Hb_001369_670 Hb_001369_670 Hb_000172_410--Hb_001369_670 Hb_121540_010 Hb_121540_010 Hb_000172_410--Hb_121540_010 Hb_002400_020 Hb_002400_020 Hb_000172_410--Hb_002400_020 Hb_000172_410--Hb_004109_240 Hb_001660_080 Hb_001660_080 Hb_000172_410--Hb_001660_080 Hb_004837_200--Hb_000836_420 Hb_189208_060 Hb_189208_060 Hb_004837_200--Hb_189208_060 Hb_004837_200--Hb_001369_670 Hb_004837_200--Hb_000172_410 Hb_001769_120 Hb_001769_120 Hb_004837_200--Hb_001769_120 Hb_008406_070 Hb_008406_070 Hb_000071_090--Hb_008406_070 Hb_002374_030 Hb_002374_030 Hb_000071_090--Hb_002374_030 Hb_000071_090--Hb_001769_120 Hb_000071_090--Hb_189208_060 Hb_001160_050 Hb_001160_050 Hb_000836_420--Hb_001160_050 Hb_000836_420--Hb_189208_060 Hb_000836_420--Hb_001660_080 Hb_000836_420--Hb_002374_030 Hb_000836_420--Hb_121540_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.73547 148.044 142.825 72.0057 2.76485 1.11546
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.24828 1.36425 0.85856 12.529 38.6703

CAGE analysis