Hb_003081_030

Information

Type -
Description -
Location Contig3081: 143821-145342
Sequence    

Annotation

kegg
ID sly:101256381
description uncharacterized LOC101256381
nr
ID XP_004239561.1
description PREDICTED: uncharacterized protein LOC101256381 [Solanum lycopersicum]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003081_030 0.0 - - PREDICTED: uncharacterized protein LOC101256381 [Solanum lycopersicum]
2 Hb_010997_020 0.2114074847 - - -
3 Hb_000529_250 0.2272687976 - - PREDICTED: nicotinamidase 1-like isoform X1 [Jatropha curcas]
4 Hb_003602_050 0.2428481492 - - zinc binding dehydrogenase, putative [Ricinus communis]
5 Hb_007108_020 0.2479049427 - - -
6 Hb_000563_270 0.2663310104 - - -
7 Hb_000012_460 0.2692713934 - - unknown [Populus trichocarpa]
8 Hb_007532_040 0.2746772087 - - -
9 Hb_001221_510 0.2755197535 - - Protein HVA22, putative [Ricinus communis]
10 Hb_003086_120 0.2855200105 - - PREDICTED: uncharacterized protein LOC105628509 [Jatropha curcas]
11 Hb_000387_100 0.2904671901 - - -
12 Hb_007747_190 0.2909775287 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000413_160 0.2973935177 - - PREDICTED: uncharacterized protein LOC105649406 isoform X2 [Jatropha curcas]
14 Hb_001969_010 0.3002040242 - - PREDICTED: probable protein Pop3 [Nelumbo nucifera]
15 Hb_000493_010 0.3051848667 - - hypothetical protein CICLE_v10021431mg [Citrus clementina]
16 Hb_008841_010 0.3065925825 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
17 Hb_001481_180 0.3097334812 - - plasma membrane H+-ATPase [Hevea brasiliensis]
18 Hb_017895_030 0.3107985522 transcription factor TF Family: C2H2 -
19 Hb_000491_090 0.311847931 - - hypothetical protein B456_008G219400 [Gossypium raimondii]
20 Hb_004448_020 0.3140221884 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003081_030 Hb_003081_030 Hb_010997_020 Hb_010997_020 Hb_003081_030--Hb_010997_020 Hb_000529_250 Hb_000529_250 Hb_003081_030--Hb_000529_250 Hb_003602_050 Hb_003602_050 Hb_003081_030--Hb_003602_050 Hb_007108_020 Hb_007108_020 Hb_003081_030--Hb_007108_020 Hb_000563_270 Hb_000563_270 Hb_003081_030--Hb_000563_270 Hb_000012_460 Hb_000012_460 Hb_003081_030--Hb_000012_460 Hb_010997_020--Hb_000563_270 Hb_010997_020--Hb_000529_250 Hb_171469_010 Hb_171469_010 Hb_010997_020--Hb_171469_010 Hb_007403_090 Hb_007403_090 Hb_010997_020--Hb_007403_090 Hb_165739_010 Hb_165739_010 Hb_010997_020--Hb_165739_010 Hb_017895_030 Hb_017895_030 Hb_000529_250--Hb_017895_030 Hb_001047_130 Hb_001047_130 Hb_000529_250--Hb_001047_130 Hb_001357_130 Hb_001357_130 Hb_000529_250--Hb_001357_130 Hb_000310_030 Hb_000310_030 Hb_000529_250--Hb_000310_030 Hb_004965_070 Hb_004965_070 Hb_000529_250--Hb_004965_070 Hb_007747_190 Hb_007747_190 Hb_003602_050--Hb_007747_190 Hb_000847_140 Hb_000847_140 Hb_003602_050--Hb_000847_140 Hb_003602_050--Hb_000563_270 Hb_012305_120 Hb_012305_120 Hb_003602_050--Hb_012305_120 Hb_007532_040 Hb_007532_040 Hb_003602_050--Hb_007532_040 Hb_003086_120 Hb_003086_120 Hb_003602_050--Hb_003086_120 Hb_000414_030 Hb_000414_030 Hb_007108_020--Hb_000414_030 Hb_000413_160 Hb_000413_160 Hb_007108_020--Hb_000413_160 Hb_001012_020 Hb_001012_020 Hb_007108_020--Hb_001012_020 Hb_007108_020--Hb_007747_190 Hb_137461_010 Hb_137461_010 Hb_007108_020--Hb_137461_010 Hb_000348_040 Hb_000348_040 Hb_000563_270--Hb_000348_040 Hb_000563_270--Hb_000847_140 Hb_015091_010 Hb_015091_010 Hb_000563_270--Hb_015091_010 Hb_063511_010 Hb_063511_010 Hb_000563_270--Hb_063511_010 Hb_007426_160 Hb_007426_160 Hb_000012_460--Hb_007426_160 Hb_086077_020 Hb_086077_020 Hb_000012_460--Hb_086077_020 Hb_000772_040 Hb_000772_040 Hb_000012_460--Hb_000772_040 Hb_000932_100 Hb_000932_100 Hb_000012_460--Hb_000932_100 Hb_001006_260 Hb_001006_260 Hb_000012_460--Hb_001006_260 Hb_004448_020 Hb_004448_020 Hb_000012_460--Hb_004448_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0810476 0 0 0 0 1.346
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.53519 0.602915 0.72811 0.12869 0.533336

CAGE analysis