Hb_003082_010

Information

Type -
Description -
Location Contig3082: 10482-11729
Sequence    

Annotation

kegg
ID rcu:RCOM_1330230
description hypothetical protein
nr
ID XP_012079727.1
description PREDICTED: putative F-box protein At3g10240 [Jatropha curcas]
swissprot
ID Q9SU30
description F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2
trembl
ID A0A067K9D3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14853 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32531: 9581-11933
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003082_010 0.0 - - PREDICTED: putative F-box protein At3g10240 [Jatropha curcas]
2 Hb_000976_210 0.0544152455 - - PREDICTED: protein PAT1 homolog 1 isoform X1 [Jatropha curcas]
3 Hb_004109_030 0.0652123683 - - conserved hypothetical protein [Ricinus communis]
4 Hb_008511_090 0.0725381084 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
5 Hb_002043_140 0.0771980079 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
6 Hb_003752_100 0.0791318999 - - PREDICTED: FRIGIDA-like protein 3 [Jatropha curcas]
7 Hb_002890_090 0.0827247595 - - Auxin response factor 1 [Glycine soja]
8 Hb_002217_170 0.0854742225 - - PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform X1 [Gossypium raimondii]
9 Hb_012055_060 0.0861116674 - - PREDICTED: uncharacterized protein LOC105639799 isoform X1 [Jatropha curcas]
10 Hb_003455_020 0.0874434186 - - PREDICTED: transportin-1 [Jatropha curcas]
11 Hb_005541_010 0.088438904 - - PREDICTED: uncharacterized protein LOC105629250 [Jatropha curcas]
12 Hb_003640_040 0.0893432567 - - PREDICTED: uncharacterized protein LOC105647348 [Jatropha curcas]
13 Hb_001005_190 0.0909044192 - - PREDICTED: UPF0496 protein At3g19330-like isoform X1 [Jatropha curcas]
14 Hb_000070_080 0.0917106151 - - PREDICTED: uncharacterized protein LOC105645742 isoform X2 [Jatropha curcas]
15 Hb_000334_220 0.0920864043 - - hypothetical protein JCGZ_16772 [Jatropha curcas]
16 Hb_000479_220 0.0922815838 - - PREDICTED: uncharacterized protein LOC105644125 [Jatropha curcas]
17 Hb_000330_040 0.0934894411 - - PREDICTED: protein RER1B-like [Jatropha curcas]
18 Hb_012564_030 0.0940061019 - - coronatine-insensitive 1 [Hevea brasiliensis]
19 Hb_000392_150 0.0941724688 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g74580 [Jatropha curcas]
20 Hb_002636_180 0.0942262957 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003082_010 Hb_003082_010 Hb_000976_210 Hb_000976_210 Hb_003082_010--Hb_000976_210 Hb_004109_030 Hb_004109_030 Hb_003082_010--Hb_004109_030 Hb_008511_090 Hb_008511_090 Hb_003082_010--Hb_008511_090 Hb_002043_140 Hb_002043_140 Hb_003082_010--Hb_002043_140 Hb_003752_100 Hb_003752_100 Hb_003082_010--Hb_003752_100 Hb_002890_090 Hb_002890_090 Hb_003082_010--Hb_002890_090 Hb_000976_210--Hb_002043_140 Hb_002006_040 Hb_002006_040 Hb_000976_210--Hb_002006_040 Hb_002217_170 Hb_002217_170 Hb_000976_210--Hb_002217_170 Hb_000317_370 Hb_000317_370 Hb_000976_210--Hb_000317_370 Hb_000976_210--Hb_002890_090 Hb_004109_030--Hb_008511_090 Hb_003373_040 Hb_003373_040 Hb_004109_030--Hb_003373_040 Hb_004109_030--Hb_002890_090 Hb_000070_080 Hb_000070_080 Hb_004109_030--Hb_000070_080 Hb_000941_130 Hb_000941_130 Hb_004109_030--Hb_000941_130 Hb_008511_090--Hb_000070_080 Hb_001005_190 Hb_001005_190 Hb_008511_090--Hb_001005_190 Hb_007163_120 Hb_007163_120 Hb_008511_090--Hb_007163_120 Hb_000479_220 Hb_000479_220 Hb_008511_090--Hb_000479_220 Hb_002078_220 Hb_002078_220 Hb_008511_090--Hb_002078_220 Hb_011491_010 Hb_011491_010 Hb_002043_140--Hb_011491_010 Hb_002043_140--Hb_002006_040 Hb_008103_060 Hb_008103_060 Hb_002043_140--Hb_008103_060 Hb_002043_140--Hb_007163_120 Hb_009615_170 Hb_009615_170 Hb_002043_140--Hb_009615_170 Hb_003752_100--Hb_004109_030 Hb_001864_060 Hb_001864_060 Hb_003752_100--Hb_001864_060 Hb_003175_030 Hb_003175_030 Hb_003752_100--Hb_003175_030 Hb_001828_130 Hb_001828_130 Hb_003752_100--Hb_001828_130 Hb_012055_060 Hb_012055_060 Hb_003752_100--Hb_012055_060 Hb_003455_020 Hb_003455_020 Hb_002890_090--Hb_003455_020 Hb_002890_090--Hb_000941_130 Hb_002636_180 Hb_002636_180 Hb_002890_090--Hb_002636_180 Hb_002890_090--Hb_002043_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.4598 28.5051 11.3098 15.4533 17.7774 12.671
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.4991 11.4212 21.9694 13.0332 7.20096

CAGE analysis