Hb_003082_040

Information

Type -
Description -
Location Contig3082: 37539-51819
Sequence    

Annotation

kegg
ID pda:103711101
description receptor-like protein kinase HSL1
nr
ID XP_008795324.1
description PREDICTED: receptor-like protein kinase HSL1 [Phoenix dactylifera]
swissprot
ID Q9FIJ6
description Serine/threonine-protein kinase-like protein CCR4 OS=Arabidopsis thaliana GN=CCR4 PE=1 SV=1
trembl
ID A0A067K670
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14857 PE=3 SV=1
Gene Ontology
ID GO:0016021
description receptor-like protein kinase haiku2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32534: 40486-40874 , PASA_asmbl_32536: 41618-41888 , PASA_asmbl_32537: 47099-50479 , PASA_asmbl_32538: 50287-51696
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003082_040 0.0 - - PREDICTED: receptor-like protein kinase HSL1 [Phoenix dactylifera]
2 Hb_002213_040 0.1469858949 - - cinnamoyl-CoA reductase [Hevea brasiliensis]
3 Hb_001004_120 0.1590156444 - - PREDICTED: receptor-like protein kinase HERK 1 isoform X2 [Jatropha curcas]
4 Hb_002685_030 0.1609094827 - - PREDICTED: protein SMG7L [Jatropha curcas]
5 Hb_030312_010 0.1610216552 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003506_020 0.1638870788 - - PREDICTED: uncharacterized protein LOC105125881 isoform X1 [Populus euphratica]
7 Hb_000342_140 0.165630977 - - PREDICTED: vacuolar-processing enzyme-like [Jatropha curcas]
8 Hb_001675_320 0.1695476039 - - PREDICTED: uncharacterized protein LOC105635025 [Jatropha curcas]
9 Hb_000000_110 0.1695918248 - - hypothetical protein CISIN_1g0027772mg, partial [Citrus sinensis]
10 Hb_000331_280 0.1712522193 - - AMP dependent CoA ligase, putative [Ricinus communis]
11 Hb_004162_120 0.1719207528 - - PREDICTED: vacuolar protein sorting-associated protein 41 homolog [Populus euphratica]
12 Hb_000107_560 0.1747324564 - - glutamate receptor 3 plant, putative [Ricinus communis]
13 Hb_000579_030 0.1747394932 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 3 [Jatropha curcas]
14 Hb_005694_010 0.1748108589 transcription factor TF Family: C2C2-Dof F-box family protein, putative isoform 1 [Theobroma cacao]
15 Hb_001103_090 0.1753490412 - - PREDICTED: patellin-3 [Populus euphratica]
16 Hb_028077_020 0.1755894378 - - conserved hypothetical protein [Ricinus communis]
17 Hb_017159_010 0.1773297584 - - -
18 Hb_048643_010 0.1773530028 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
19 Hb_000950_040 0.1783563649 - - cation-transporting atpase plant, putative [Ricinus communis]
20 Hb_014497_040 0.1786722467 - - PREDICTED: calvin cycle protein CP12-3, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003082_040 Hb_003082_040 Hb_002213_040 Hb_002213_040 Hb_003082_040--Hb_002213_040 Hb_001004_120 Hb_001004_120 Hb_003082_040--Hb_001004_120 Hb_002685_030 Hb_002685_030 Hb_003082_040--Hb_002685_030 Hb_030312_010 Hb_030312_010 Hb_003082_040--Hb_030312_010 Hb_003506_020 Hb_003506_020 Hb_003082_040--Hb_003506_020 Hb_000342_140 Hb_000342_140 Hb_003082_040--Hb_000342_140 Hb_001205_110 Hb_001205_110 Hb_002213_040--Hb_001205_110 Hb_012239_030 Hb_012239_030 Hb_002213_040--Hb_012239_030 Hb_002192_030 Hb_002192_030 Hb_002213_040--Hb_002192_030 Hb_008749_030 Hb_008749_030 Hb_002213_040--Hb_008749_030 Hb_002662_050 Hb_002662_050 Hb_002213_040--Hb_002662_050 Hb_000500_080 Hb_000500_080 Hb_001004_120--Hb_000500_080 Hb_000649_270 Hb_000649_270 Hb_001004_120--Hb_000649_270 Hb_012353_040 Hb_012353_040 Hb_001004_120--Hb_012353_040 Hb_150346_010 Hb_150346_010 Hb_001004_120--Hb_150346_010 Hb_014497_040 Hb_014497_040 Hb_001004_120--Hb_014497_040 Hb_000950_040 Hb_000950_040 Hb_002685_030--Hb_000950_040 Hb_002740_040 Hb_002740_040 Hb_002685_030--Hb_002740_040 Hb_001522_040 Hb_001522_040 Hb_002685_030--Hb_001522_040 Hb_000732_230 Hb_000732_230 Hb_002685_030--Hb_000732_230 Hb_052117_010 Hb_052117_010 Hb_002685_030--Hb_052117_010 Hb_014720_030 Hb_014720_030 Hb_002685_030--Hb_014720_030 Hb_000094_190 Hb_000094_190 Hb_030312_010--Hb_000094_190 Hb_063716_090 Hb_063716_090 Hb_030312_010--Hb_063716_090 Hb_001255_010 Hb_001255_010 Hb_030312_010--Hb_001255_010 Hb_000797_060 Hb_000797_060 Hb_030312_010--Hb_000797_060 Hb_030312_010--Hb_001004_120 Hb_000000_120 Hb_000000_120 Hb_003506_020--Hb_000000_120 Hb_000216_020 Hb_000216_020 Hb_003506_020--Hb_000216_020 Hb_005970_010 Hb_005970_010 Hb_003506_020--Hb_005970_010 Hb_002122_080 Hb_002122_080 Hb_003506_020--Hb_002122_080 Hb_002151_100 Hb_002151_100 Hb_003506_020--Hb_002151_100 Hb_028077_020 Hb_028077_020 Hb_003506_020--Hb_028077_020 Hb_003637_020 Hb_003637_020 Hb_000342_140--Hb_003637_020 Hb_006185_010 Hb_006185_010 Hb_000342_140--Hb_006185_010 Hb_154538_010 Hb_154538_010 Hb_000342_140--Hb_154538_010 Hb_017159_010 Hb_017159_010 Hb_000342_140--Hb_017159_010 Hb_001278_040 Hb_001278_040 Hb_000342_140--Hb_001278_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.72464 31.4077 6.19846 35.9959 9.39946 10.2252
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.67894 3.16528 0.189147 14.2506 12.3863

CAGE analysis