Hb_003085_050

Information

Type -
Description -
Location Contig3085: 64747-66576
Sequence    

Annotation

kegg
ID rcu:RCOM_0521450
description Polygalacturonase non-catalytic subunit AroGP3 precursor, putative
nr
ID XP_002522730.1
description Polygalacturonase non-catalytic subunit AroGP3 precursor, putative [Ricinus communis]
swissprot
ID Q6I5B2
description BURP domain-containing protein 6 OS=Oryza sativa subsp. japonica GN=BURP6 PE=2 SV=1
trembl
ID B9S9R1
description Polygalacturonase non-catalytic subunit AroGP3, putative OS=Ricinus communis GN=RCOM_0521450 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32556: 64554-83894
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003085_050 0.0 - - Polygalacturonase non-catalytic subunit AroGP3 precursor, putative [Ricinus communis]
2 Hb_157122_010 0.0091933504 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
3 Hb_002553_080 0.0675761626 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF096-like [Eucalyptus grandis]
4 Hb_002766_040 0.0906420242 - - 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative [Ricinus communis]
5 Hb_002157_180 0.1014468345 - - separase, putative [Ricinus communis]
6 Hb_007735_010 0.1168651084 - - Gibberellin 20 oxidase, putative [Ricinus communis]
7 Hb_014113_010 0.1206117506 - - PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]
8 Hb_001652_050 0.1340990251 - - -
9 Hb_012702_020 0.1430332878 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
10 Hb_002400_250 0.1450210959 - - amino acid binding protein, putative [Ricinus communis]
11 Hb_000462_020 0.1463960672 - - UDP-glucosyltransferase, putative [Ricinus communis]
12 Hb_183700_010 0.1473591631 - - UDP-glucosyltransferase, putative [Ricinus communis]
13 Hb_002171_070 0.1495026294 desease resistance Gene Name: NB-ARC NBS-LRR resistance gene-like protein ARGH30 [Populus trichocarpa]
14 Hb_000101_060 0.1519586876 - - -
15 Hb_004931_060 0.1567260936 transcription factor TF Family: MYB-related PREDICTED: myb-related protein Myb4 [Nelumbo nucifera]
16 Hb_008111_020 0.1589635869 - - Receptor like protein 6, putative [Theobroma cacao]
17 Hb_001596_040 0.1598490771 - - PREDICTED: caffeic acid 3-O-methyltransferase 1-like [Populus euphratica]
18 Hb_003581_240 0.163133473 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
19 Hb_008020_010 0.1648977703 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like [Jatropha curcas]
20 Hb_015912_010 0.1654355504 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_003085_050 Hb_003085_050 Hb_157122_010 Hb_157122_010 Hb_003085_050--Hb_157122_010 Hb_002553_080 Hb_002553_080 Hb_003085_050--Hb_002553_080 Hb_002766_040 Hb_002766_040 Hb_003085_050--Hb_002766_040 Hb_002157_180 Hb_002157_180 Hb_003085_050--Hb_002157_180 Hb_007735_010 Hb_007735_010 Hb_003085_050--Hb_007735_010 Hb_014113_010 Hb_014113_010 Hb_003085_050--Hb_014113_010 Hb_157122_010--Hb_002553_080 Hb_157122_010--Hb_002157_180 Hb_157122_010--Hb_002766_040 Hb_157122_010--Hb_014113_010 Hb_157122_010--Hb_007735_010 Hb_002553_080--Hb_002766_040 Hb_002553_080--Hb_007735_010 Hb_001168_080 Hb_001168_080 Hb_002553_080--Hb_001168_080 Hb_005550_070 Hb_005550_070 Hb_002553_080--Hb_005550_070 Hb_002766_040--Hb_007735_010 Hb_183700_010 Hb_183700_010 Hb_002766_040--Hb_183700_010 Hb_002766_040--Hb_014113_010 Hb_008111_020 Hb_008111_020 Hb_002157_180--Hb_008111_020 Hb_001652_050 Hb_001652_050 Hb_002157_180--Hb_001652_050 Hb_047923_010 Hb_047923_010 Hb_002157_180--Hb_047923_010 Hb_003752_130 Hb_003752_130 Hb_002157_180--Hb_003752_130 Hb_007735_010--Hb_183700_010 Hb_031862_240 Hb_031862_240 Hb_007735_010--Hb_031862_240 Hb_011628_030 Hb_011628_030 Hb_007735_010--Hb_011628_030 Hb_007735_010--Hb_014113_010 Hb_084495_010 Hb_084495_010 Hb_014113_010--Hb_084495_010 Hb_099198_010 Hb_099198_010 Hb_014113_010--Hb_099198_010 Hb_003121_020 Hb_003121_020 Hb_014113_010--Hb_003121_020 Hb_014113_010--Hb_183700_010 Hb_003581_240 Hb_003581_240 Hb_014113_010--Hb_003581_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0561071 0.0147597 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0943589 0

CAGE analysis