Hb_003085_080

Information

Type -
Description -
Location Contig3085: 85280-87016
Sequence    

Annotation

kegg
ID rcu:RCOM_1578720
description nucleic acid binding protein, putative
nr
ID XP_002513525.1
description nucleic acid binding protein, putative [Ricinus communis]
swissprot
ID Q0D3J9
description Zinc finger CCCH domain-containing protein 53 OS=Oryza sativa subsp. japonica GN=Os07g0682400 PE=2 SV=1
trembl
ID B9RIF6
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_1578720 PE=4 SV=1
Gene Ontology
ID GO:0000166
description nucleic acid binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32558: 85375-87531
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003085_080 0.0 - - nucleic acid binding protein, putative [Ricinus communis]
2 Hb_004128_090 0.0974047692 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 44 [Jatropha curcas]
3 Hb_002475_030 0.098160698 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003842_010 0.1009282535 - - receptor protein kinase, putative [Ricinus communis]
5 Hb_000203_080 0.105953006 - - Xylem bark cysteine peptidase 3 isoform 1 [Theobroma cacao]
6 Hb_010839_010 0.1139218673 - - receptor-kinase, putative [Ricinus communis]
7 Hb_001014_150 0.1147508604 - - zinc finger protein, putative [Ricinus communis]
8 Hb_003640_010 0.1186432793 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
9 Hb_000011_120 0.1187315615 - - PREDICTED: ATPase 10, plasma membrane-type-like [Populus euphratica]
10 Hb_002811_020 0.1231688755 - - Cysteine synthase [Morus notabilis]
11 Hb_004010_090 0.1232217596 - - ATP binding protein, putative [Ricinus communis]
12 Hb_175758_010 0.1243374529 - - PREDICTED: aspartic proteinase A1-like isoform X2 [Jatropha curcas]
13 Hb_005276_220 0.1243466047 transcription factor TF Family: bHLH PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]
14 Hb_000661_230 0.1270376332 - - PREDICTED: zinc finger CCCH domain-containing protein 22-like isoform X2 [Jatropha curcas]
15 Hb_013848_030 0.1286514949 - - PREDICTED: probable aminotransferase TAT2 [Jatropha curcas]
16 Hb_029576_080 0.1286709488 - - Aspartic proteinase precursor, putative [Ricinus communis]
17 Hb_000317_220 0.1291115605 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001329_110 0.1295348897 - - PREDICTED: uncharacterized protein LOC105642675 [Jatropha curcas]
19 Hb_002622_010 0.1302065221 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
20 Hb_000112_050 0.1304738298 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1 [Jatropha curcas]

Gene co-expression network

sample Hb_003085_080 Hb_003085_080 Hb_004128_090 Hb_004128_090 Hb_003085_080--Hb_004128_090 Hb_002475_030 Hb_002475_030 Hb_003085_080--Hb_002475_030 Hb_003842_010 Hb_003842_010 Hb_003085_080--Hb_003842_010 Hb_000203_080 Hb_000203_080 Hb_003085_080--Hb_000203_080 Hb_010839_010 Hb_010839_010 Hb_003085_080--Hb_010839_010 Hb_001014_150 Hb_001014_150 Hb_003085_080--Hb_001014_150 Hb_004010_090 Hb_004010_090 Hb_004128_090--Hb_004010_090 Hb_004128_090--Hb_002475_030 Hb_004128_090--Hb_010839_010 Hb_009150_060 Hb_009150_060 Hb_004128_090--Hb_009150_060 Hb_009812_010 Hb_009812_010 Hb_004128_090--Hb_009812_010 Hb_002475_030--Hb_004010_090 Hb_002475_030--Hb_009150_060 Hb_002475_030--Hb_003842_010 Hb_002475_030--Hb_010839_010 Hb_001345_010 Hb_001345_010 Hb_003842_010--Hb_001345_010 Hb_005276_220 Hb_005276_220 Hb_003842_010--Hb_005276_220 Hb_003842_010--Hb_000203_080 Hb_003842_010--Hb_009150_060 Hb_000840_050 Hb_000840_050 Hb_000203_080--Hb_000840_050 Hb_001114_120 Hb_001114_120 Hb_000203_080--Hb_001114_120 Hb_001329_110 Hb_001329_110 Hb_000203_080--Hb_001329_110 Hb_002622_010 Hb_002622_010 Hb_000203_080--Hb_002622_010 Hb_175758_010 Hb_175758_010 Hb_000203_080--Hb_175758_010 Hb_010839_010--Hb_004010_090 Hb_010839_010--Hb_009812_010 Hb_029576_080 Hb_029576_080 Hb_010839_010--Hb_029576_080 Hb_000011_120 Hb_000011_120 Hb_010839_010--Hb_000011_120 Hb_005116_010 Hb_005116_010 Hb_010839_010--Hb_005116_010 Hb_006538_010 Hb_006538_010 Hb_001014_150--Hb_006538_010 Hb_002640_040 Hb_002640_040 Hb_001014_150--Hb_002640_040 Hb_006788_150 Hb_006788_150 Hb_001014_150--Hb_006788_150 Hb_000661_230 Hb_000661_230 Hb_001014_150--Hb_000661_230 Hb_001014_150--Hb_010839_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.35478 31.5191 26.8206 33.9532 0.270195 0.546107
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.80381 0.0395124 1.52799 100.47 38.4147

CAGE analysis