Hb_003086_020

Information

Type -
Description -
Location Contig3086: 8817-13433
Sequence    

Annotation

kegg
ID rcu:RCOM_0902160
description TMV resistance protein N, putative
nr
ID KDP37035.1
description hypothetical protein JCGZ_06091 [Jatropha curcas]
swissprot
ID Q40392
description TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
trembl
ID A0A067KXN2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06091 PE=4 SV=1
Gene Ontology
ID GO:0043531
description tmv resistance protein n-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32561: 9333-9998 , PASA_asmbl_32562: 10071-10437 , PASA_asmbl_32563: 10668-11585 , PASA_asmbl_32565: 11956-12498 , PASA_asmbl_32566: 12614-13214
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003086_020 0.0 - - hypothetical protein JCGZ_06091 [Jatropha curcas]
2 Hb_003086_110 0.0657872878 - - PREDICTED: dihydroneopterin aldolase-like isoform X2 [Prunus mume]
3 Hb_000152_140 0.0702034722 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
4 Hb_133271_020 0.074815242 - - prohibitin, putative [Ricinus communis]
5 Hb_000272_100 0.07592552 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
6 Hb_004662_030 0.0760221811 - - hypothetical protein PRUPE_ppa012487mg [Prunus persica]
7 Hb_157854_010 0.0798397447 - - PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
8 Hb_158092_070 0.0811032228 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
9 Hb_004116_040 0.0815566006 transcription factor TF Family: HMG hypothetical protein POPTR_0010s19720g [Populus trichocarpa]
10 Hb_003052_100 0.0815634279 - - ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_002686_270 0.0860212516 - - conserved hypothetical protein [Ricinus communis]
12 Hb_033491_010 0.086817191 - - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis]
13 Hb_002025_320 0.0869138699 - - PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Jatropha curcas]
14 Hb_004221_010 0.0880042844 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
15 Hb_000371_080 0.0880447327 - - ubiquitin-conjugating enzyme m, putative [Ricinus communis]
16 Hb_002762_060 0.0903776352 - - PREDICTED: diphthine methyltransferase homolog [Jatropha curcas]
17 Hb_000282_060 0.0912841454 - - PREDICTED: uncharacterized protein LOC105638155 [Jatropha curcas]
18 Hb_006569_020 0.0922493965 - - hypothetical protein POPTR_0010s22990g [Populus trichocarpa]
19 Hb_002263_010 0.0927530991 - - hypothetical protein CICLE_v10012259mg [Citrus clementina]
20 Hb_005686_110 0.0934296264 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]

Gene co-expression network

sample Hb_003086_020 Hb_003086_020 Hb_003086_110 Hb_003086_110 Hb_003086_020--Hb_003086_110 Hb_000152_140 Hb_000152_140 Hb_003086_020--Hb_000152_140 Hb_133271_020 Hb_133271_020 Hb_003086_020--Hb_133271_020 Hb_000272_100 Hb_000272_100 Hb_003086_020--Hb_000272_100 Hb_004662_030 Hb_004662_030 Hb_003086_020--Hb_004662_030 Hb_157854_010 Hb_157854_010 Hb_003086_020--Hb_157854_010 Hb_007166_050 Hb_007166_050 Hb_003086_110--Hb_007166_050 Hb_118977_020 Hb_118977_020 Hb_003086_110--Hb_118977_020 Hb_003086_110--Hb_000272_100 Hb_001437_040 Hb_001437_040 Hb_003086_110--Hb_001437_040 Hb_000617_320 Hb_000617_320 Hb_003086_110--Hb_000617_320 Hb_002686_270 Hb_002686_270 Hb_000152_140--Hb_002686_270 Hb_002025_320 Hb_002025_320 Hb_000152_140--Hb_002025_320 Hb_000700_090 Hb_000700_090 Hb_000152_140--Hb_000700_090 Hb_000696_110 Hb_000696_110 Hb_000152_140--Hb_000696_110 Hb_005941_010 Hb_005941_010 Hb_000152_140--Hb_005941_010 Hb_158092_070 Hb_158092_070 Hb_133271_020--Hb_158092_070 Hb_133271_020--Hb_004662_030 Hb_000975_290 Hb_000975_290 Hb_133271_020--Hb_000975_290 Hb_001030_120 Hb_001030_120 Hb_133271_020--Hb_001030_120 Hb_133271_020--Hb_002686_270 Hb_004223_130 Hb_004223_130 Hb_133271_020--Hb_004223_130 Hb_033491_010 Hb_033491_010 Hb_000272_100--Hb_033491_010 Hb_159558_030 Hb_159558_030 Hb_000272_100--Hb_159558_030 Hb_000732_260 Hb_000732_260 Hb_000272_100--Hb_000732_260 Hb_004607_140 Hb_004607_140 Hb_000272_100--Hb_004607_140 Hb_002097_110 Hb_002097_110 Hb_004662_030--Hb_002097_110 Hb_009711_030 Hb_009711_030 Hb_004662_030--Hb_009711_030 Hb_000376_050 Hb_000376_050 Hb_004662_030--Hb_000376_050 Hb_015001_020 Hb_015001_020 Hb_004662_030--Hb_015001_020 Hb_022250_040 Hb_022250_040 Hb_004662_030--Hb_022250_040 Hb_002762_060 Hb_002762_060 Hb_157854_010--Hb_002762_060 Hb_157854_010--Hb_118977_020 Hb_003185_020 Hb_003185_020 Hb_157854_010--Hb_003185_020 Hb_157854_010--Hb_022250_040 Hb_157854_010--Hb_004607_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.7095 7.30175 2.02886 5.17151 21.7551 31.5283
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.2852 25.0342 22.1524 12.5261 3.12783

CAGE analysis