Hb_003086_030

Information

Type -
Description -
Location Contig3086: 28619-31711
Sequence    

Annotation

kegg
ID rcu:RCOM_0422200
description hypothetical protein
nr
ID XP_012074266.1
description PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
swissprot
ID Q66GR0
description Fasciclin-like arabinogalactan protein 17 OS=Arabidopsis thaliana GN=FLA17 PE=2 SV=1
trembl
ID A0A067KM42
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08722 PE=4 SV=1
Gene Ontology
ID GO:0005576
description fasciclin-like arabinogalactan protein 17

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32569: 28679-31737 , PASA_asmbl_32570: 28679-31737
cDNA
(Sanger)
(ID:Location)		 007_P03.ab1: 28679-29388

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003086_030 0.0 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
2 Hb_000003_580 0.0993039584 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003125_210 0.1048004591 - - Phospholipase C 4 precursor, putative [Ricinus communis]
4 Hb_002894_080 0.1147313511 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000030_130 0.1168457038 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
6 Hb_019516_060 0.1205848718 - - PREDICTED: uncharacterized protein LOC105634259 [Jatropha curcas]
7 Hb_000457_120 0.1237031879 - - PREDICTED: death-associated protein kinase dapk-1 [Jatropha curcas]
8 Hb_006750_010 0.1237820228 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
9 Hb_001951_080 0.1277086896 - - O-acetyltransferase, putative [Ricinus communis]
10 Hb_000928_200 0.1287028419 - - PREDICTED: RING-H2 finger protein ATL52-like [Jatropha curcas]
11 Hb_000108_180 0.1298268667 - - PREDICTED: uncharacterized protein LOC105630021 [Jatropha curcas]
12 Hb_005305_040 0.1299821931 transcription factor TF Family: C3H transcription factor, putative [Ricinus communis]
13 Hb_000251_120 0.1316749387 - - O-acetyltransferase, putative [Ricinus communis]
14 Hb_001008_080 0.1332952795 - - PREDICTED: acyl-protein thioesterase 2 [Jatropha curcas]
15 Hb_012395_110 0.1338647643 - - PREDICTED: peroxygenase [Jatropha curcas]
16 Hb_003177_040 0.1357516925 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
17 Hb_000000_050 0.1366257559 - - conserved hypothetical protein [Ricinus communis]
18 Hb_174541_030 0.1372823721 - - Cytochrome P450, family 98, subfamily A, polypeptide 3 [Theobroma cacao]
19 Hb_006570_090 0.1374180011 - - tubulin beta chain, putative [Ricinus communis]
20 Hb_084147_010 0.1379254161 - - amino acid transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_003086_030 Hb_003086_030 Hb_000003_580 Hb_000003_580 Hb_003086_030--Hb_000003_580 Hb_003125_210 Hb_003125_210 Hb_003086_030--Hb_003125_210 Hb_002894_080 Hb_002894_080 Hb_003086_030--Hb_002894_080 Hb_000030_130 Hb_000030_130 Hb_003086_030--Hb_000030_130 Hb_019516_060 Hb_019516_060 Hb_003086_030--Hb_019516_060 Hb_000457_120 Hb_000457_120 Hb_003086_030--Hb_000457_120 Hb_000003_580--Hb_003125_210 Hb_000103_300 Hb_000103_300 Hb_000003_580--Hb_000103_300 Hb_000003_580--Hb_000457_120 Hb_001936_120 Hb_001936_120 Hb_000003_580--Hb_001936_120 Hb_002284_060 Hb_002284_060 Hb_000003_580--Hb_002284_060 Hb_009113_080 Hb_009113_080 Hb_003125_210--Hb_009113_080 Hb_004696_010 Hb_004696_010 Hb_003125_210--Hb_004696_010 Hb_002815_020 Hb_002815_020 Hb_003125_210--Hb_002815_020 Hb_001951_080 Hb_001951_080 Hb_003125_210--Hb_001951_080 Hb_010222_040 Hb_010222_040 Hb_003125_210--Hb_010222_040 Hb_000000_050 Hb_000000_050 Hb_002894_080--Hb_000000_050 Hb_001279_400 Hb_001279_400 Hb_002894_080--Hb_001279_400 Hb_004917_020 Hb_004917_020 Hb_002894_080--Hb_004917_020 Hb_000813_070 Hb_000813_070 Hb_002894_080--Hb_000813_070 Hb_002973_050 Hb_002973_050 Hb_002894_080--Hb_002973_050 Hb_002894_080--Hb_001951_080 Hb_000030_130--Hb_019516_060 Hb_174541_030 Hb_174541_030 Hb_000030_130--Hb_174541_030 Hb_000246_130 Hb_000246_130 Hb_000030_130--Hb_000246_130 Hb_000928_200 Hb_000928_200 Hb_000030_130--Hb_000928_200 Hb_030565_100 Hb_030565_100 Hb_000030_130--Hb_030565_100 Hb_019516_060--Hb_000246_130 Hb_000820_110 Hb_000820_110 Hb_019516_060--Hb_000820_110 Hb_003462_040 Hb_003462_040 Hb_019516_060--Hb_003462_040 Hb_012395_110 Hb_012395_110 Hb_019516_060--Hb_012395_110 Hb_006750_010 Hb_006750_010 Hb_019516_060--Hb_006750_010 Hb_000457_120--Hb_000928_200 Hb_000457_120--Hb_001936_120 Hb_029791_010 Hb_029791_010 Hb_000457_120--Hb_029791_010 Hb_000020_200 Hb_000020_200 Hb_000457_120--Hb_000020_200 Hb_005305_040 Hb_005305_040 Hb_000457_120--Hb_005305_040 Hb_002759_030 Hb_002759_030 Hb_000457_120--Hb_002759_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.15161 65.2639 80.6701 311.659 8.37412 7.15446
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.76813 3.34983 6.63082 23.4006 166.036

CAGE analysis