Hb_003086_070

Information

Type -
Description -
Location Contig3086: 54246-58415
Sequence    

Annotation

kegg
ID rcu:RCOM_0422040
description Co-chaperone protein HscB, mitochondrial precursor, putative
nr
ID XP_012074271.1
description PREDICTED: iron-sulfur cluster co-chaperone protein HscB, mitochondrial [Jatropha curcas]
swissprot
ID Q8IWL3
description Iron-sulfur cluster co-chaperone protein HscB, mitochondrial OS=Homo sapiens GN=HSCB PE=1 SV=3
trembl
ID A0A067KIX5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08726 PE=4 SV=1
Gene Ontology
ID GO:0051087
description iron-sulfur cluster co-chaperone protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32574: 54998-55919 , PASA_asmbl_32575: 57000-58126 , PASA_asmbl_32576: 57000-57954 , PASA_asmbl_32578: 58932-60623
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003086_070 0.0 - - PREDICTED: iron-sulfur cluster co-chaperone protein HscB, mitochondrial [Jatropha curcas]
2 Hb_003126_040 0.0837421664 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002154_120 0.0878566184 - - PREDICTED: uncharacterized protein LOC105630563 [Jatropha curcas]
4 Hb_000290_020 0.0977435624 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K-like isoform X2 [Populus euphratica]
5 Hb_001348_070 0.1003174442 - - Uncharacterized protein isoform 1 [Theobroma cacao]
6 Hb_000690_130 0.1017890332 - - PREDICTED: uncharacterized protein LOC105631771 [Jatropha curcas]
7 Hb_005928_060 0.1039107725 - - DNA-directed RNA polymerase III 25 kD polypeptide, putative [Ricinus communis]
8 Hb_012675_090 0.1057050354 - - PREDICTED: DNA-directed RNA polymerase II subunit 4-like isoform X1 [Citrus sinensis]
9 Hb_000670_020 0.1059900498 - - PREDICTED: chromatin modification-related protein EAF3-like [Jatropha curcas]
10 Hb_001629_110 0.1060367959 - - PREDICTED: uncharacterized protein LOC105632808 [Jatropha curcas]
11 Hb_000808_250 0.1078277817 - - PREDICTED: uncharacterized protein LOC105647419 [Jatropha curcas]
12 Hb_003025_020 0.1090278662 - - WD-repeat protein, putative [Ricinus communis]
13 Hb_001047_100 0.1090829193 - - 40S ribosomal protein S18, putative [Ricinus communis]
14 Hb_005618_160 0.1098791703 - - PREDICTED: putative proline--tRNA ligase C19C7.06 [Jatropha curcas]
15 Hb_031527_100 0.1099464855 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001352_090 0.1108903127 - - PREDICTED: UPF0161 protein At3g09310 [Jatropha curcas]
17 Hb_006623_020 0.1117121628 - - PREDICTED: protein LURP-one-related 7 isoform X1 [Jatropha curcas]
18 Hb_001195_760 0.1117550805 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
19 Hb_001564_130 0.1120276387 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
20 Hb_006064_010 0.1130417612 - - PREDICTED: DDB1- and CUL4-associated factor 4 [Jatropha curcas]

Gene co-expression network

sample Hb_003086_070 Hb_003086_070 Hb_003126_040 Hb_003126_040 Hb_003086_070--Hb_003126_040 Hb_002154_120 Hb_002154_120 Hb_003086_070--Hb_002154_120 Hb_000290_020 Hb_000290_020 Hb_003086_070--Hb_000290_020 Hb_001348_070 Hb_001348_070 Hb_003086_070--Hb_001348_070 Hb_000690_130 Hb_000690_130 Hb_003086_070--Hb_000690_130 Hb_005928_060 Hb_005928_060 Hb_003086_070--Hb_005928_060 Hb_003126_040--Hb_000290_020 Hb_012675_090 Hb_012675_090 Hb_003126_040--Hb_012675_090 Hb_004525_100 Hb_004525_100 Hb_003126_040--Hb_004525_100 Hb_004044_020 Hb_004044_020 Hb_003126_040--Hb_004044_020 Hb_000088_200 Hb_000088_200 Hb_003126_040--Hb_000088_200 Hb_012022_160 Hb_012022_160 Hb_002154_120--Hb_012022_160 Hb_010068_040 Hb_010068_040 Hb_002154_120--Hb_010068_040 Hb_000236_240 Hb_000236_240 Hb_002154_120--Hb_000236_240 Hb_006120_070 Hb_006120_070 Hb_002154_120--Hb_006120_070 Hb_002154_120--Hb_000690_130 Hb_120410_010 Hb_120410_010 Hb_002154_120--Hb_120410_010 Hb_031939_010 Hb_031939_010 Hb_000290_020--Hb_031939_010 Hb_001047_100 Hb_001047_100 Hb_000290_020--Hb_001047_100 Hb_011848_010 Hb_011848_010 Hb_000290_020--Hb_011848_010 Hb_008887_050 Hb_008887_050 Hb_000290_020--Hb_008887_050 Hb_143629_010 Hb_143629_010 Hb_000290_020--Hb_143629_010 Hb_000617_220 Hb_000617_220 Hb_000290_020--Hb_000617_220 Hb_002687_140 Hb_002687_140 Hb_001348_070--Hb_002687_140 Hb_007154_020 Hb_007154_020 Hb_001348_070--Hb_007154_020 Hb_003752_080 Hb_003752_080 Hb_001348_070--Hb_003752_080 Hb_001564_130 Hb_001564_130 Hb_001348_070--Hb_001564_130 Hb_000670_020 Hb_000670_020 Hb_001348_070--Hb_000670_020 Hb_002233_150 Hb_002233_150 Hb_001348_070--Hb_002233_150 Hb_006064_010 Hb_006064_010 Hb_000690_130--Hb_006064_010 Hb_002687_130 Hb_002687_130 Hb_000690_130--Hb_002687_130 Hb_000373_240 Hb_000373_240 Hb_000690_130--Hb_000373_240 Hb_002391_300 Hb_002391_300 Hb_000690_130--Hb_002391_300 Hb_004182_040 Hb_004182_040 Hb_000690_130--Hb_004182_040 Hb_002805_270 Hb_002805_270 Hb_000690_130--Hb_002805_270 Hb_000905_190 Hb_000905_190 Hb_005928_060--Hb_000905_190 Hb_005527_050 Hb_005527_050 Hb_005928_060--Hb_005527_050 Hb_001214_130 Hb_001214_130 Hb_005928_060--Hb_001214_130 Hb_000019_230 Hb_000019_230 Hb_005928_060--Hb_000019_230 Hb_005237_010 Hb_005237_010 Hb_005928_060--Hb_005237_010 Hb_000997_020 Hb_000997_020 Hb_005928_060--Hb_000997_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1026 3.22357 8.34516 3.52719 20.024 14.1734
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.5708 14.3346 6.39734 4.68034 4.72459

CAGE analysis