Hb_003086_100

Information

Type -
Description -
Location Contig3086: 70281-74678
Sequence    

Annotation

kegg
ID tcc:TCM_023088
description Ribosomal protein L22p/L17e family protein
nr
ID KDP36085.1
description hypothetical protein JCGZ_08729 [Jatropha curcas]
swissprot
ID A6U864
description 50S ribosomal protein L22 OS=Sinorhizobium medicae (strain WSM419) GN=rplV PE=3 SV=1
trembl
ID A0A067KUY1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08729 PE=3 SV=1
Gene Ontology
ID GO:0015934
description ribosomal protein l22p l17e family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32580: 70259-74661
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003086_100 0.0 - - hypothetical protein JCGZ_08729 [Jatropha curcas]
2 Hb_012265_010 0.0691997821 - - hypothetical protein CISIN_1g026883mg [Citrus sinensis]
3 Hb_003376_130 0.0736365135 transcription factor TF Family: S1Fa-like DNA-binding protein S1FA, putative [Ricinus communis]
4 Hb_001433_050 0.0746076498 - - 60S ribosomal protein L18, putative [Ricinus communis]
5 Hb_001383_060 0.0833923264 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
6 Hb_002311_320 0.0855187255 - - PREDICTED: mediator of RNA polymerase II transcription subunit 20a [Jatropha curcas]
7 Hb_010883_150 0.0890440252 - - Ubiquitin-fold modifier 1 precursor, putative [Ricinus communis]
8 Hb_148930_010 0.0904002175 - - PREDICTED: uncharacterized protein LOC105648400 [Jatropha curcas]
9 Hb_002571_020 0.0913940617 - - PREDICTED: uncharacterized protein LOC105132457 isoform X12 [Populus euphratica]
10 Hb_000120_750 0.0918602853 desease resistance Gene Name: NTPase_1 ATP binding protein, putative [Ricinus communis]
11 Hb_000479_180 0.0936276666 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001584_070 0.0936534282 - - conserved hypothetical protein [Ricinus communis]
13 Hb_010172_030 0.0936886844 - - hypothetical protein JCGZ_04668 [Jatropha curcas]
14 Hb_000333_090 0.0941821985 - - PREDICTED: uncharacterized protein LOC102617374 isoform X1 [Citrus sinensis]
15 Hb_012515_010 0.0943790489 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
16 Hb_005701_020 0.0946018366 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 21 [Jatropha curcas]
17 Hb_004595_020 0.0948393571 - - PREDICTED: probable prefoldin subunit 5 [Jatropha curcas]
18 Hb_130291_010 0.0971509517 - - PREDICTED: protein PEROXIN-4 isoform X1 [Jatropha curcas]
19 Hb_001538_100 0.0972064883 - - PREDICTED: histone deacetylase 6 [Jatropha curcas]
20 Hb_003175_040 0.0973496513 - - PREDICTED: katanin p60 ATPase-containing subunit A1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003086_100 Hb_003086_100 Hb_012265_010 Hb_012265_010 Hb_003086_100--Hb_012265_010 Hb_003376_130 Hb_003376_130 Hb_003086_100--Hb_003376_130 Hb_001433_050 Hb_001433_050 Hb_003086_100--Hb_001433_050 Hb_001383_060 Hb_001383_060 Hb_003086_100--Hb_001383_060 Hb_002311_320 Hb_002311_320 Hb_003086_100--Hb_002311_320 Hb_010883_150 Hb_010883_150 Hb_003086_100--Hb_010883_150 Hb_012265_010--Hb_001433_050 Hb_130291_010 Hb_130291_010 Hb_012265_010--Hb_130291_010 Hb_148930_010 Hb_148930_010 Hb_012265_010--Hb_148930_010 Hb_002835_320 Hb_002835_320 Hb_012265_010--Hb_002835_320 Hb_010172_030 Hb_010172_030 Hb_012265_010--Hb_010172_030 Hb_000329_330 Hb_000329_330 Hb_003376_130--Hb_000329_330 Hb_000212_260 Hb_000212_260 Hb_003376_130--Hb_000212_260 Hb_003376_130--Hb_148930_010 Hb_148200_010 Hb_148200_010 Hb_003376_130--Hb_148200_010 Hb_002571_020 Hb_002571_020 Hb_003376_130--Hb_002571_020 Hb_001433_050--Hb_001383_060 Hb_000024_030 Hb_000024_030 Hb_001433_050--Hb_000024_030 Hb_001433_050--Hb_148200_010 Hb_003927_130 Hb_003927_130 Hb_001433_050--Hb_003927_130 Hb_007479_020 Hb_007479_020 Hb_001433_050--Hb_007479_020 Hb_001433_050--Hb_148930_010 Hb_001383_060--Hb_003927_130 Hb_001584_070 Hb_001584_070 Hb_001383_060--Hb_001584_070 Hb_000340_140 Hb_000340_140 Hb_001383_060--Hb_000340_140 Hb_001383_060--Hb_007479_020 Hb_000120_750 Hb_000120_750 Hb_001383_060--Hb_000120_750 Hb_002311_320--Hb_010883_150 Hb_000317_340 Hb_000317_340 Hb_002311_320--Hb_000317_340 Hb_000505_140 Hb_000505_140 Hb_002311_320--Hb_000505_140 Hb_000526_150 Hb_000526_150 Hb_002311_320--Hb_000526_150 Hb_002311_320--Hb_002571_020 Hb_010883_150--Hb_001584_070 Hb_008847_020 Hb_008847_020 Hb_010883_150--Hb_008847_020 Hb_010883_150--Hb_000526_150 Hb_000840_190 Hb_000840_190 Hb_010883_150--Hb_000840_190 Hb_000061_330 Hb_000061_330 Hb_010883_150--Hb_000061_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.2479 5.07833 8.46082 8.95411 24.6654 31.3242
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
63.6954 62.6462 31.0798 20.1018 5.68781

CAGE analysis