Hb_003086_110

Information

Type -
Description -
Location Contig3086: 75686-78231
Sequence    

Annotation

kegg
ID pmum:103339557
description dihydroneopterin aldolase-like
nr
ID XP_008241089.1
description PREDICTED: dihydroneopterin aldolase-like isoform X2 [Prunus mume]
swissprot
ID Q9SF23
description Dihydroneopterin aldolase 1 OS=Arabidopsis thaliana GN=FOLB1 PE=1 SV=1
trembl
ID M5VXY0
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013065mg PE=4 SV=1
Gene Ontology
ID GO:0004150
description dihydroneopterin aldolase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32581: 75649-78167
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003086_110 0.0 - - PREDICTED: dihydroneopterin aldolase-like isoform X2 [Prunus mume]
2 Hb_007166_050 0.0546001292 - - -
3 Hb_003086_020 0.0657872878 - - hypothetical protein JCGZ_06091 [Jatropha curcas]
4 Hb_118977_020 0.0664084528 - - PREDICTED: uncharacterized protein At3g03773 [Jatropha curcas]
5 Hb_000272_100 0.0744624357 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
6 Hb_001437_040 0.0769610503 - - PREDICTED: ATPase GET3-like [Vitis vinifera]
7 Hb_000617_320 0.0796557419 - - 40S ribosomal protein S21B [Hevea brasiliensis]
8 Hb_001047_010 0.0816906501 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003125_040 0.0844461561 - - PREDICTED: uncharacterized protein LOC105640201 isoform X1 [Jatropha curcas]
10 Hb_006569_020 0.0851402049 - - hypothetical protein POPTR_0010s22990g [Populus trichocarpa]
11 Hb_133271_020 0.0856697044 - - prohibitin, putative [Ricinus communis]
12 Hb_157854_010 0.0860635337 - - PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
13 Hb_000371_080 0.0872287785 - - ubiquitin-conjugating enzyme m, putative [Ricinus communis]
14 Hb_005686_110 0.0874464835 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
15 Hb_001019_090 0.0885668651 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
16 Hb_017895_050 0.0900862871 - - PREDICTED: LOW QUALITY PROTEIN: UPF0160 protein MYG1, mitochondrial [Jatropha curcas]
17 Hb_000997_060 0.0906471641 - - PREDICTED: DNA repair protein XRCC4 [Jatropha curcas]
18 Hb_000316_110 0.0909303548 - - Dolichyl-phosphate beta-glucosyltransferase, putative [Ricinus communis]
19 Hb_004724_100 0.0913277733 - - 60S ribosomal protein L10aA [Hevea brasiliensis]
20 Hb_134226_010 0.0914280155 - - 40S ribosomal protein S21e, putative [Ricinus communis]

Gene co-expression network

sample Hb_003086_110 Hb_003086_110 Hb_007166_050 Hb_007166_050 Hb_003086_110--Hb_007166_050 Hb_003086_020 Hb_003086_020 Hb_003086_110--Hb_003086_020 Hb_118977_020 Hb_118977_020 Hb_003086_110--Hb_118977_020 Hb_000272_100 Hb_000272_100 Hb_003086_110--Hb_000272_100 Hb_001437_040 Hb_001437_040 Hb_003086_110--Hb_001437_040 Hb_000617_320 Hb_000617_320 Hb_003086_110--Hb_000617_320 Hb_007166_050--Hb_000617_320 Hb_001019_090 Hb_001019_090 Hb_007166_050--Hb_001019_090 Hb_007166_050--Hb_118977_020 Hb_007166_050--Hb_001437_040 Hb_000316_110 Hb_000316_110 Hb_007166_050--Hb_000316_110 Hb_000152_140 Hb_000152_140 Hb_003086_020--Hb_000152_140 Hb_133271_020 Hb_133271_020 Hb_003086_020--Hb_133271_020 Hb_003086_020--Hb_000272_100 Hb_004662_030 Hb_004662_030 Hb_003086_020--Hb_004662_030 Hb_157854_010 Hb_157854_010 Hb_003086_020--Hb_157854_010 Hb_118977_020--Hb_001019_090 Hb_118977_020--Hb_000617_320 Hb_118977_020--Hb_001437_040 Hb_118977_020--Hb_157854_010 Hb_033491_010 Hb_033491_010 Hb_000272_100--Hb_033491_010 Hb_159558_030 Hb_159558_030 Hb_000272_100--Hb_159558_030 Hb_000732_260 Hb_000732_260 Hb_000272_100--Hb_000732_260 Hb_004607_140 Hb_004607_140 Hb_000272_100--Hb_004607_140 Hb_006569_020 Hb_006569_020 Hb_001437_040--Hb_006569_020 Hb_098709_010 Hb_098709_010 Hb_001437_040--Hb_098709_010 Hb_003453_010 Hb_003453_010 Hb_001437_040--Hb_003453_010 Hb_000617_320--Hb_001019_090 Hb_007632_250 Hb_007632_250 Hb_000617_320--Hb_007632_250 Hb_004297_100 Hb_004297_100 Hb_000617_320--Hb_004297_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
57.1347 12.6373 5.43095 14.7726 48.121 72.5393
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
80.979 61.3106 32.6039 22.737 5.06072

CAGE analysis