Hb_003086_130

Information

Type -
Description -
Location Contig3086: 81061-86090
Sequence    

Annotation

kegg
ID bvg:104883907
description uncharacterized LOC104883907
nr
ID XP_012068505.1
description PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID K4BEQ7
description Uncharacterized protein OS=Solanum lycopersicum GN=Solyc03g013360.1 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003086_130 0.0 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
2 Hb_008516_020 0.1565953892 - - PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]
3 Hb_004333_020 0.1838432099 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
4 Hb_000392_330 0.1841334915 - - PREDICTED: protein kinase 2B, chloroplastic-like [Jatropha curcas]
5 Hb_000995_070 0.2104041581 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
6 Hb_005914_070 0.2169191146 - - conserved hypothetical protein [Ricinus communis]
7 Hb_091433_040 0.2176538865 - - PREDICTED: josephin-like protein [Jatropha curcas]
8 Hb_000784_040 0.2189161005 - - hypothetical protein POPTR_0013s11550g [Populus trichocarpa]
9 Hb_000227_200 0.2283243861 - - PREDICTED: protein FANTASTIC FOUR 3 [Populus euphratica]
10 Hb_001005_070 0.2344359508 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF113-like [Jatropha curcas]
11 Hb_000375_340 0.235075253 - - PREDICTED: UDP-glycosyltransferase 87A1-like [Populus euphratica]
12 Hb_004048_060 0.2352764206 - - hypothetical protein PRUPE_ppa023788mg, partial [Prunus persica]
13 Hb_000972_010 0.2378020196 - - PREDICTED: kinesin KP1 [Jatropha curcas]
14 Hb_000161_150 0.2406923745 - - PREDICTED: protein argonaute 2-like [Jatropha curcas]
15 Hb_003913_080 0.2454425924 - - rpl27A [Hemiselmis andersenii]
16 Hb_004064_020 0.2458249991 - - hypothetical protein M569_06853, partial [Genlisea aurea]
17 Hb_003032_100 0.2472809592 - - PREDICTED: GDP-mannose transporter GONST4 [Jatropha curcas]
18 Hb_000111_010 0.2492870165 - - DNA-directed RNA polymerase, putative [Ricinus communis]
19 Hb_010174_070 0.2496575476 - - -
20 Hb_004208_100 0.2514337359 - - Ribosomal protein L3 plastid isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_003086_130 Hb_003086_130 Hb_008516_020 Hb_008516_020 Hb_003086_130--Hb_008516_020 Hb_004333_020 Hb_004333_020 Hb_003086_130--Hb_004333_020 Hb_000392_330 Hb_000392_330 Hb_003086_130--Hb_000392_330 Hb_000995_070 Hb_000995_070 Hb_003086_130--Hb_000995_070 Hb_005914_070 Hb_005914_070 Hb_003086_130--Hb_005914_070 Hb_091433_040 Hb_091433_040 Hb_003086_130--Hb_091433_040 Hb_008516_020--Hb_000392_330 Hb_004048_060 Hb_004048_060 Hb_008516_020--Hb_004048_060 Hb_008516_020--Hb_091433_040 Hb_001534_170 Hb_001534_170 Hb_008516_020--Hb_001534_170 Hb_000951_040 Hb_000951_040 Hb_008516_020--Hb_000951_040 Hb_004333_020--Hb_005914_070 Hb_004333_020--Hb_000392_330 Hb_001369_450 Hb_001369_450 Hb_004333_020--Hb_001369_450 Hb_009314_010 Hb_009314_010 Hb_004333_020--Hb_009314_010 Hb_000771_130 Hb_000771_130 Hb_004333_020--Hb_000771_130 Hb_000375_340 Hb_000375_340 Hb_000392_330--Hb_000375_340 Hb_000392_330--Hb_004048_060 Hb_000392_330--Hb_091433_040 Hb_100873_030 Hb_100873_030 Hb_000995_070--Hb_100873_030 Hb_001114_340 Hb_001114_340 Hb_000995_070--Hb_001114_340 Hb_000784_040 Hb_000784_040 Hb_000995_070--Hb_000784_040 Hb_002073_120 Hb_002073_120 Hb_000995_070--Hb_002073_120 Hb_000172_570 Hb_000172_570 Hb_000995_070--Hb_000172_570 Hb_010417_010 Hb_010417_010 Hb_000995_070--Hb_010417_010 Hb_005914_070--Hb_091433_040 Hb_003052_040 Hb_003052_040 Hb_005914_070--Hb_003052_040 Hb_000227_200 Hb_000227_200 Hb_005914_070--Hb_000227_200 Hb_113906_010 Hb_113906_010 Hb_005914_070--Hb_113906_010 Hb_000111_010 Hb_000111_010 Hb_005914_070--Hb_000111_010 Hb_005914_070--Hb_001369_450 Hb_091433_040--Hb_113906_010 Hb_091433_040--Hb_000227_200 Hb_000450_020 Hb_000450_020 Hb_091433_040--Hb_000450_020 Hb_091433_040--Hb_000111_010 Hb_091433_040--Hb_000784_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0112932 0 0 0 0 0.0173758
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0413943 0.0651423 0.12378 0.0323725 0

CAGE analysis