Hb_003086_150

Information

Type -
Description -
Location Contig3086: 147206-151397
Sequence    

Annotation

kegg
ID rcu:RCOM_0421670
description hypothetical protein
nr
ID XP_012074284.1
description PREDICTED: uncharacterized protein LOC105635789 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KW64
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08733 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32592: 147287-151366 , PASA_asmbl_32593: 147287-155080
cDNA
(Sanger)
(ID:Location)		 042_K11.ab1: 147287-148684 , 051_E01.ab1: 147291-147773

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003086_150 0.0 - - PREDICTED: uncharacterized protein LOC105635789 [Jatropha curcas]
2 Hb_000827_050 0.0787964534 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
3 Hb_002799_110 0.0798518548 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
4 Hb_000236_040 0.0867178169 - - PREDICTED: uncharacterized protein LOC105633150 isoform X1 [Jatropha curcas]
5 Hb_050514_010 0.095972511 - - hypothetical protein 29 [Hevea brasiliensis]
6 Hb_001314_070 0.0963396915 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000529_170 0.0970387395 - - hypothetical protein JCGZ_14691 [Jatropha curcas]
8 Hb_005446_010 0.1006554541 - - PREDICTED: zinc finger protein 830 [Jatropha curcas]
9 Hb_001776_160 0.100986988 - - 20S proteasome alpha subunit G1 [Theobroma cacao]
10 Hb_034380_020 0.100996024 - - PREDICTED: phosphoglycerate mutase-like [Jatropha curcas]
11 Hb_000205_090 0.1012032226 - - hypothetical protein POPTR_0019s03570g [Populus trichocarpa]
12 Hb_000836_450 0.1018988775 - - PREDICTED: 3-methyl-2-oxobutanoate hydroxymethyltransferase 1, mitochondrial-like [Jatropha curcas]
13 Hb_000120_960 0.1042290095 - - isocitrate dehydrogenase, putative [Ricinus communis]
14 Hb_002660_070 0.1043281941 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
15 Hb_002014_020 0.1050796562 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
16 Hb_001512_030 0.105569527 - - PREDICTED: surfeit locus protein 2 [Jatropha curcas]
17 Hb_000155_200 0.1060085626 - - Rab7 [Hevea brasiliensis]
18 Hb_003052_190 0.1062779162 - - PREDICTED: uncharacterized protein LOC105641937 isoform X2 [Jatropha curcas]
19 Hb_000334_150 0.1067044139 - - conserved hypothetical protein [Ricinus communis]
20 Hb_157022_010 0.1076431311 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]

Gene co-expression network

sample Hb_003086_150 Hb_003086_150 Hb_000827_050 Hb_000827_050 Hb_003086_150--Hb_000827_050 Hb_002799_110 Hb_002799_110 Hb_003086_150--Hb_002799_110 Hb_000236_040 Hb_000236_040 Hb_003086_150--Hb_000236_040 Hb_050514_010 Hb_050514_010 Hb_003086_150--Hb_050514_010 Hb_001314_070 Hb_001314_070 Hb_003086_150--Hb_001314_070 Hb_000529_170 Hb_000529_170 Hb_003086_150--Hb_000529_170 Hb_000827_050--Hb_000236_040 Hb_000827_050--Hb_050514_010 Hb_004109_170 Hb_004109_170 Hb_000827_050--Hb_004109_170 Hb_000260_030 Hb_000260_030 Hb_000827_050--Hb_000260_030 Hb_000003_230 Hb_000003_230 Hb_000827_050--Hb_000003_230 Hb_000205_090 Hb_000205_090 Hb_000827_050--Hb_000205_090 Hb_000614_220 Hb_000614_220 Hb_002799_110--Hb_000614_220 Hb_027654_060 Hb_027654_060 Hb_002799_110--Hb_027654_060 Hb_000614_160 Hb_000614_160 Hb_002799_110--Hb_000614_160 Hb_002799_110--Hb_000260_030 Hb_002490_020 Hb_002490_020 Hb_002799_110--Hb_002490_020 Hb_000236_040--Hb_000205_090 Hb_001633_050 Hb_001633_050 Hb_000236_040--Hb_001633_050 Hb_002014_020 Hb_002014_020 Hb_000236_040--Hb_002014_020 Hb_003304_020 Hb_003304_020 Hb_000236_040--Hb_003304_020 Hb_004058_030 Hb_004058_030 Hb_000236_040--Hb_004058_030 Hb_050514_010--Hb_000260_030 Hb_001300_150 Hb_001300_150 Hb_050514_010--Hb_001300_150 Hb_003728_060 Hb_003728_060 Hb_050514_010--Hb_003728_060 Hb_050514_010--Hb_004109_170 Hb_000465_160 Hb_000465_160 Hb_050514_010--Hb_000465_160 Hb_000603_080 Hb_000603_080 Hb_001314_070--Hb_000603_080 Hb_000393_020 Hb_000393_020 Hb_001314_070--Hb_000393_020 Hb_000250_060 Hb_000250_060 Hb_001314_070--Hb_000250_060 Hb_010812_120 Hb_010812_120 Hb_001314_070--Hb_010812_120 Hb_000483_260 Hb_000483_260 Hb_001314_070--Hb_000483_260 Hb_004117_260 Hb_004117_260 Hb_001314_070--Hb_004117_260 Hb_001726_020 Hb_001726_020 Hb_000529_170--Hb_001726_020 Hb_000039_160 Hb_000039_160 Hb_000529_170--Hb_000039_160 Hb_005539_280 Hb_005539_280 Hb_000529_170--Hb_005539_280 Hb_000529_170--Hb_000250_060 Hb_001226_040 Hb_001226_040 Hb_000529_170--Hb_001226_040 Hb_001245_100 Hb_001245_100 Hb_000529_170--Hb_001245_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.9755 6.18679 13.8891 7.65872 4.65745 7.97935
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.939 22.3696 22.6043 12.6598 10.627

CAGE analysis