Hb_003086_170

Information

Type -
Description -
Location Contig3086: 158605-162961
Sequence    

Annotation

kegg
ID rcu:RCOM_0421550
description Phosphatidylglycerol/phosphatidylinositol transfer protein precursor, putative
nr
ID XP_012074287.1
description PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 [Jatropha curcas]
swissprot
ID Q54SW1
description Putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 OS=Dictyostelium discoideum GN=DDB_G0282179 PE=3 SV=2
trembl
ID B9SDL0
description Phosphatidylglycerol/phosphatidylinositol transfer protein, putative OS=Ricinus communis GN=RCOM_0421550 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32597: 158656-162959
cDNA
(Sanger)
(ID:Location)		 011_E18.ab1: 158903-162943 , 032_D17.ab1: 158946-162959

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003086_170 0.0 - - PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 [Jatropha curcas]
2 Hb_000365_400 0.0505314982 - - metal ion transporter, putative [Ricinus communis]
3 Hb_012518_070 0.0745686453 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 9 isoform X1 [Jatropha curcas]
4 Hb_010515_020 0.0802151044 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
5 Hb_004994_020 0.0814835472 - - PREDICTED: probable methyltransferase PMT13 [Jatropha curcas]
6 Hb_001269_600 0.0831086902 - - protein phosphatase 2c, putative [Ricinus communis]
7 Hb_000363_040 0.0893142902 - - Protein transport protein Sec24A, putative [Ricinus communis]
8 Hb_001369_360 0.0901690306 - - embryo yellow protein, partial [Manihot esculenta]
9 Hb_002874_110 0.0904407495 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
10 Hb_028487_160 0.0907627446 - - clathrin assembly protein, putative [Ricinus communis]
11 Hb_003097_140 0.0908914342 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
12 Hb_029243_030 0.0916062857 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
13 Hb_027445_020 0.091790746 - - PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein [Jatropha curcas]
14 Hb_012114_100 0.0928230523 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
15 Hb_000684_210 0.0941704646 - - PREDICTED: uncharacterized protein LOC105642177 [Jatropha curcas]
16 Hb_011819_020 0.0943255418 - - PREDICTED: uncharacterized protein LOC105643703 isoform X1 [Jatropha curcas]
17 Hb_009569_040 0.0944101661 - - PREDICTED: uncharacterized protein LOC105635573 [Jatropha curcas]
18 Hb_006452_120 0.0950024701 - - PREDICTED: protein FAM188A [Jatropha curcas]
19 Hb_002902_130 0.0956118931 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
20 Hb_004668_090 0.0965903445 - - PREDICTED: uncharacterized protein LOC105630440 [Jatropha curcas]

Gene co-expression network

sample Hb_003086_170 Hb_003086_170 Hb_000365_400 Hb_000365_400 Hb_003086_170--Hb_000365_400 Hb_012518_070 Hb_012518_070 Hb_003086_170--Hb_012518_070 Hb_010515_020 Hb_010515_020 Hb_003086_170--Hb_010515_020 Hb_004994_020 Hb_004994_020 Hb_003086_170--Hb_004994_020 Hb_001269_600 Hb_001269_600 Hb_003086_170--Hb_001269_600 Hb_000363_040 Hb_000363_040 Hb_003086_170--Hb_000363_040 Hb_000365_400--Hb_001269_600 Hb_002902_130 Hb_002902_130 Hb_000365_400--Hb_002902_130 Hb_009569_040 Hb_009569_040 Hb_000365_400--Hb_009569_040 Hb_000684_210 Hb_000684_210 Hb_000365_400--Hb_000684_210 Hb_027380_220 Hb_027380_220 Hb_000365_400--Hb_027380_220 Hb_001440_020 Hb_001440_020 Hb_012518_070--Hb_001440_020 Hb_012055_040 Hb_012055_040 Hb_012518_070--Hb_012055_040 Hb_000317_100 Hb_000317_100 Hb_012518_070--Hb_000317_100 Hb_012114_100 Hb_012114_100 Hb_012518_070--Hb_012114_100 Hb_005215_010 Hb_005215_010 Hb_012518_070--Hb_005215_010 Hb_000494_050 Hb_000494_050 Hb_012518_070--Hb_000494_050 Hb_006452_120 Hb_006452_120 Hb_010515_020--Hb_006452_120 Hb_000574_450 Hb_000574_450 Hb_010515_020--Hb_000574_450 Hb_002989_020 Hb_002989_020 Hb_010515_020--Hb_002989_020 Hb_011063_050 Hb_011063_050 Hb_010515_020--Hb_011063_050 Hb_029243_030 Hb_029243_030 Hb_010515_020--Hb_029243_030 Hb_002830_010 Hb_002830_010 Hb_010515_020--Hb_002830_010 Hb_028487_160 Hb_028487_160 Hb_004994_020--Hb_028487_160 Hb_016172_030 Hb_016172_030 Hb_004994_020--Hb_016172_030 Hb_004994_020--Hb_012518_070 Hb_028487_070 Hb_028487_070 Hb_004994_020--Hb_028487_070 Hb_000103_290 Hb_000103_290 Hb_004994_020--Hb_000103_290 Hb_001703_050 Hb_001703_050 Hb_001269_600--Hb_001703_050 Hb_003159_050 Hb_003159_050 Hb_001269_600--Hb_003159_050 Hb_000409_050 Hb_000409_050 Hb_001269_600--Hb_000409_050 Hb_001828_180 Hb_001828_180 Hb_001269_600--Hb_001828_180 Hb_004096_110 Hb_004096_110 Hb_001269_600--Hb_004096_110 Hb_000363_190 Hb_000363_190 Hb_001269_600--Hb_000363_190 Hb_016347_010 Hb_016347_010 Hb_000363_040--Hb_016347_010 Hb_002908_050 Hb_002908_050 Hb_000363_040--Hb_002908_050 Hb_005305_050 Hb_005305_050 Hb_000363_040--Hb_005305_050 Hb_004677_050 Hb_004677_050 Hb_000363_040--Hb_004677_050 Hb_000109_180 Hb_000109_180 Hb_000363_040--Hb_000109_180 Hb_000976_100 Hb_000976_100 Hb_000363_040--Hb_000976_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.3299 85.3952 65.7746 169.24 102.504 68.0683
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
59.4075 95.867 81.5796 132.353 144.211

CAGE analysis