Hb_003086_180

Information

Type -
Description -
Location Contig3086: 181993-182517
Sequence    

Annotation

kegg
ID pxb:103940432
description RING-H2 finger protein ATL70-like
nr
ID XP_009348829.1
description PREDICTED: RING-H2 finger protein ATL70-like [Pyrus x bretschneideri]
swissprot
ID Q9FG21
description Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana GN=ATL71 PE=3 SV=1
trembl
ID A0A067KIY4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08736 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring-h2 finger protein atl70-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003086_180 0.0 - - PREDICTED: RING-H2 finger protein ATL70-like [Pyrus x bretschneideri]
2 Hb_023774_010 0.0310816965 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
3 Hb_000613_270 0.0337315186 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
4 Hb_089843_010 0.0542088728 - - hypothetical protein JCGZ_05278 [Jatropha curcas]
5 Hb_001652_050 0.0637280293 - - -
6 Hb_047923_010 0.0654792443 - - PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
7 Hb_174514_010 0.0784664207 - - flavin-containing monooxygenase family protein [Populus trichocarpa]
8 Hb_001006_200 0.1146262494 transcription factor TF Family: G2-like conserved hypothetical protein [Ricinus communis]
9 Hb_002157_180 0.128876166 - - separase, putative [Ricinus communis]
10 Hb_008111_020 0.1422847191 - - Receptor like protein 6, putative [Theobroma cacao]
11 Hb_000059_290 0.1523124442 - - pterin-4-alpha-carbinolamine dehydratase, putative [Ricinus communis]
12 Hb_000203_030 0.1670922592 - - -
13 Hb_099198_010 0.1695591929 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 isoform X2 [Nicotiana tomentosiformis]
14 Hb_002553_100 0.176403471 transcription factor TF Family: ERF Ethylene-responsive transcription factor [Morus notabilis]
15 Hb_084495_010 0.1866331967 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Eucalyptus grandis]
16 Hb_157122_010 0.1882282109 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
17 Hb_100873_040 0.1901458963 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
18 Hb_003085_050 0.1958627781 - - Polygalacturonase non-catalytic subunit AroGP3 precursor, putative [Ricinus communis]
19 Hb_079158_010 0.2023083259 - - PREDICTED: sperm acrosomal protein FSA-ACR.1-like [Jatropha curcas]
20 Hb_014113_010 0.2047587955 - - PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003086_180 Hb_003086_180 Hb_023774_010 Hb_023774_010 Hb_003086_180--Hb_023774_010 Hb_000613_270 Hb_000613_270 Hb_003086_180--Hb_000613_270 Hb_089843_010 Hb_089843_010 Hb_003086_180--Hb_089843_010 Hb_001652_050 Hb_001652_050 Hb_003086_180--Hb_001652_050 Hb_047923_010 Hb_047923_010 Hb_003086_180--Hb_047923_010 Hb_174514_010 Hb_174514_010 Hb_003086_180--Hb_174514_010 Hb_023774_010--Hb_000613_270 Hb_023774_010--Hb_047923_010 Hb_023774_010--Hb_001652_050 Hb_023774_010--Hb_089843_010 Hb_002157_180 Hb_002157_180 Hb_023774_010--Hb_002157_180 Hb_000613_270--Hb_047923_010 Hb_000613_270--Hb_001652_050 Hb_000613_270--Hb_089843_010 Hb_000613_270--Hb_002157_180 Hb_089843_010--Hb_174514_010 Hb_089843_010--Hb_047923_010 Hb_089843_010--Hb_001652_050 Hb_001652_050--Hb_047923_010 Hb_001652_050--Hb_002157_180 Hb_008111_020 Hb_008111_020 Hb_001652_050--Hb_008111_020 Hb_047923_010--Hb_008111_020 Hb_047923_010--Hb_002157_180 Hb_174514_010--Hb_023774_010 Hb_174514_010--Hb_000613_270 Hb_174514_010--Hb_047923_010 Hb_174514_010--Hb_001652_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.155067 0.165636 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.322685 0

CAGE analysis