Hb_003086_200

Information

Type -
Description -
Location Contig3086: 200915-202350
Sequence    

Annotation

kegg
ID pop:POPTR_0006s22290g
description POPTRDRAFT_561446; alcohol dehydroge family protein
nr
ID XP_012074292.1
description PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
swissprot
ID F1SWA0
description Zerumbone synthase OS=Zingiber zerumbet GN=ZSD1 PE=1 SV=1
trembl
ID A0A067KUZ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08739 PE=3 SV=1
Gene Ontology
ID GO:0016491
description secoisolariciresinol dehydrogenase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32602: 201961-202421
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003086_200 0.0 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
2 Hb_002007_230 0.0624877091 - - PREDICTED: probable linoleate 9S-lipoxygenase 5 [Jatropha curcas]
3 Hb_000265_010 0.0804577595 - - amino acid transporter, putative [Ricinus communis]
4 Hb_005797_030 0.0874171135 - - PREDICTED: MATE efflux family protein LAL5-like [Jatropha curcas]
5 Hb_000043_080 0.0882164979 - - lipid binding protein, putative [Ricinus communis]
6 Hb_000300_570 0.092693543 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
7 Hb_012053_030 0.0974757078 - - PREDICTED: GDSL esterase/lipase At5g22810 [Jatropha curcas]
8 Hb_008503_020 0.1006831103 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
9 Hb_012395_070 0.1016395083 - - PREDICTED: probable metal-nicotianamine transporter YSL6 [Jatropha curcas]
10 Hb_002553_120 0.1066164791 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 1B [Jatropha curcas]
11 Hb_001489_030 0.1082418236 - - PREDICTED: protein NRT1/ PTR FAMILY 4.6 [Jatropha curcas]
12 Hb_001864_010 0.1144193976 - - conserved hypothetical protein [Ricinus communis]
13 Hb_151364_010 0.1147498292 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
14 Hb_000556_200 0.1148350993 - - PREDICTED: AT-hook motif nuclear-localized protein 22 [Jatropha curcas]
15 Hb_001596_040 0.1164498328 - - PREDICTED: caffeic acid 3-O-methyltransferase 1-like [Populus euphratica]
16 Hb_006446_060 0.1273833449 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Populus euphratica]
17 Hb_004931_060 0.1279350848 transcription factor TF Family: MYB-related PREDICTED: myb-related protein Myb4 [Nelumbo nucifera]
18 Hb_000221_170 0.1286950064 - - PREDICTED: alcohol dehydrogenase-like 2 [Jatropha curcas]
19 Hb_001104_280 0.130480161 - - PREDICTED: UPF0481 protein At3g47200 [Jatropha curcas]
20 Hb_019229_020 0.1308500181 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_003086_200 Hb_003086_200 Hb_002007_230 Hb_002007_230 Hb_003086_200--Hb_002007_230 Hb_000265_010 Hb_000265_010 Hb_003086_200--Hb_000265_010 Hb_005797_030 Hb_005797_030 Hb_003086_200--Hb_005797_030 Hb_000043_080 Hb_000043_080 Hb_003086_200--Hb_000043_080 Hb_000300_570 Hb_000300_570 Hb_003086_200--Hb_000300_570 Hb_012053_030 Hb_012053_030 Hb_003086_200--Hb_012053_030 Hb_002007_230--Hb_005797_030 Hb_002007_230--Hb_000300_570 Hb_001864_010 Hb_001864_010 Hb_002007_230--Hb_001864_010 Hb_002007_230--Hb_000265_010 Hb_151364_010 Hb_151364_010 Hb_002007_230--Hb_151364_010 Hb_000265_010--Hb_000300_570 Hb_000265_010--Hb_012053_030 Hb_012395_070 Hb_012395_070 Hb_000265_010--Hb_012395_070 Hb_001489_030 Hb_001489_030 Hb_000265_010--Hb_001489_030 Hb_005797_030--Hb_001864_010 Hb_000920_360 Hb_000920_360 Hb_005797_030--Hb_000920_360 Hb_001104_280 Hb_001104_280 Hb_005797_030--Hb_001104_280 Hb_000286_190 Hb_000286_190 Hb_005797_030--Hb_000286_190 Hb_000043_080--Hb_001489_030 Hb_000556_200 Hb_000556_200 Hb_000043_080--Hb_000556_200 Hb_000043_080--Hb_012395_070 Hb_000043_080--Hb_002007_230 Hb_000043_080--Hb_000265_010 Hb_000300_570--Hb_012053_030 Hb_000300_570--Hb_001489_030 Hb_000185_060 Hb_000185_060 Hb_000300_570--Hb_000185_060 Hb_008053_070 Hb_008053_070 Hb_012053_030--Hb_008053_070 Hb_012053_030--Hb_000185_060 Hb_007666_040 Hb_007666_040 Hb_012053_030--Hb_007666_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 6.20784 0.388603 0.639991 0.0563323 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 9.14406 0.408555

CAGE analysis