Hb_003089_020

Information

Type -
Description -
Location Contig3089: 52318-54813
Sequence    

Annotation

kegg
ID rcu:RCOM_0640160
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012075125.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g18940, chloroplastic [Jatropha curcas]
swissprot
ID O64624
description Pentatricopeptide repeat-containing protein At2g18940, chloroplastic OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1
trembl
ID A0A067KGL7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10360 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32606: 52486-53101
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003089_020 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g18940, chloroplastic [Jatropha curcas]
2 Hb_002374_250 0.096821948 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006274_050 0.1002106788 - - hypothetical protein VITISV_022618 [Vitis vinifera]
4 Hb_012098_070 0.101634992 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
5 Hb_003475_020 0.103990343 - - hypothetical protein JCGZ_13177 [Jatropha curcas]
6 Hb_000110_270 0.1129294748 - - prp4, putative [Ricinus communis]
7 Hb_000676_200 0.1134868706 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]
8 Hb_003467_030 0.1156673249 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
9 Hb_002639_110 0.11681964 - - hypothetical protein L484_011673 [Morus notabilis]
10 Hb_000204_120 0.117890514 - - PREDICTED: uncharacterized protein LOC105639239 [Jatropha curcas]
11 Hb_003994_110 0.1188702558 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646130 [Jatropha curcas]
12 Hb_001790_080 0.1199297045 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X3 [Jatropha curcas]
13 Hb_000365_240 0.1210199512 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33A-like [Jatropha curcas]
14 Hb_000130_320 0.121150053 desease resistance Gene Name: AAA PREDICTED: uncharacterized protein ycf45 [Jatropha curcas]
15 Hb_030131_030 0.1224550273 - - PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Jatropha curcas]
16 Hb_009178_060 0.123685149 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_005701_130 0.1248562293 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 3 [Jatropha curcas]
18 Hb_005511_150 0.1256156408 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g71810, chloroplastic isoform X5 [Populus euphratica]
19 Hb_135572_010 0.125620281 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
20 Hb_005250_030 0.1276157365 - - PREDICTED: uncharacterized protein LOC105640177 [Jatropha curcas]

Gene co-expression network

sample Hb_003089_020 Hb_003089_020 Hb_002374_250 Hb_002374_250 Hb_003089_020--Hb_002374_250 Hb_006274_050 Hb_006274_050 Hb_003089_020--Hb_006274_050 Hb_012098_070 Hb_012098_070 Hb_003089_020--Hb_012098_070 Hb_003475_020 Hb_003475_020 Hb_003089_020--Hb_003475_020 Hb_000110_270 Hb_000110_270 Hb_003089_020--Hb_000110_270 Hb_000676_200 Hb_000676_200 Hb_003089_020--Hb_000676_200 Hb_009778_060 Hb_009778_060 Hb_002374_250--Hb_009778_060 Hb_005511_150 Hb_005511_150 Hb_002374_250--Hb_005511_150 Hb_002374_250--Hb_000676_200 Hb_030131_030 Hb_030131_030 Hb_002374_250--Hb_030131_030 Hb_009178_060 Hb_009178_060 Hb_002374_250--Hb_009178_060 Hb_000365_240 Hb_000365_240 Hb_006274_050--Hb_000365_240 Hb_000922_030 Hb_000922_030 Hb_006274_050--Hb_000922_030 Hb_003467_030 Hb_003467_030 Hb_006274_050--Hb_003467_030 Hb_003994_110 Hb_003994_110 Hb_006274_050--Hb_003994_110 Hb_001435_030 Hb_001435_030 Hb_006274_050--Hb_001435_030 Hb_099270_030 Hb_099270_030 Hb_012098_070--Hb_099270_030 Hb_005488_170 Hb_005488_170 Hb_012098_070--Hb_005488_170 Hb_000815_170 Hb_000815_170 Hb_012098_070--Hb_000815_170 Hb_003607_070 Hb_003607_070 Hb_012098_070--Hb_003607_070 Hb_005801_020 Hb_005801_020 Hb_012098_070--Hb_005801_020 Hb_005250_030 Hb_005250_030 Hb_012098_070--Hb_005250_030 Hb_003475_020--Hb_003994_110 Hb_001790_080 Hb_001790_080 Hb_003475_020--Hb_001790_080 Hb_003475_020--Hb_000676_200 Hb_000130_320 Hb_000130_320 Hb_003475_020--Hb_000130_320 Hb_002232_390 Hb_002232_390 Hb_003475_020--Hb_002232_390 Hb_002282_070 Hb_002282_070 Hb_003475_020--Hb_002282_070 Hb_001726_100 Hb_001726_100 Hb_000110_270--Hb_001726_100 Hb_000363_300 Hb_000363_300 Hb_000110_270--Hb_000363_300 Hb_000110_270--Hb_005488_170 Hb_005211_020 Hb_005211_020 Hb_000110_270--Hb_005211_020 Hb_004306_120 Hb_004306_120 Hb_000110_270--Hb_004306_120 Hb_012244_020 Hb_012244_020 Hb_000110_270--Hb_012244_020 Hb_002631_250 Hb_002631_250 Hb_000676_200--Hb_002631_250 Hb_000676_200--Hb_030131_030 Hb_005282_020 Hb_005282_020 Hb_000676_200--Hb_005282_020 Hb_003878_080 Hb_003878_080 Hb_000676_200--Hb_003878_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.87441 3.17267 1.84003 2.4761 1.36052 3.15541
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.40708 1.60163 2.94701 3.60596 10.213

CAGE analysis