Hb_003090_060

Information

Type -
Description -
Location Contig3090: 48952-49809
Sequence    

Annotation

kegg
ID tcc:TCM_021793
description PAR1 protein
nr
ID XP_007026832.1
description PAR1 protein [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061EYI9
description PAR1 protein OS=Theobroma cacao GN=TCM_021793 PE=4 SV=1
Gene Ontology
ID GO:0004386
description par1 protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32631: 48922-49289 , PASA_asmbl_32632: 49332-49904
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003090_060 0.0 - - PAR1 protein [Theobroma cacao]
2 Hb_111985_060 0.0511659349 - - PREDICTED: cytokinin dehydrogenase 5 [Jatropha curcas]
3 Hb_002621_030 0.0629455653 - - hypothetical protein CISIN_1g006155mg [Citrus sinensis]
4 Hb_079955_010 0.0666871777 transcription factor TF Family: MYB-related PREDICTED: myb-related protein Myb4-like [Populus euphratica]
5 Hb_005054_300 0.0922022784 - - aquaporin [Hevea brasiliensis]
6 Hb_151281_010 0.0959161727 - - PREDICTED: LOW QUALITY PROTEIN: probable L-type lectin-domain containing receptor kinase S.5 [Jatropha curcas]
7 Hb_004931_050 0.1067672429 transcription factor TF Family: MYB-related Transcription repressor MYB4, putative [Ricinus communis]
8 Hb_002219_090 0.1155041646 - - protein kinase atmrk1, putative [Ricinus communis]
9 Hb_131591_010 0.1187152664 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
10 Hb_011791_010 0.1223605306 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
11 Hb_000676_030 0.1245618063 - - PREDICTED: probable mitochondrial chaperone BCS1-B [Jatropha curcas]
12 Hb_011054_030 0.1272375859 - - PREDICTED: uncharacterized protein LOC103324687 [Prunus mume]
13 Hb_157980_010 0.1306403545 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
14 Hb_003636_010 0.1332314157 - - hypothetical protein CISIN_1g037850mg, partial [Citrus sinensis]
15 Hb_021596_070 0.1355283072 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
16 Hb_008667_020 0.1356688844 - - PREDICTED: uncharacterized protein LOC101299609 [Fragaria vesca subsp. vesca]
17 Hb_002085_070 0.1367573423 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
18 Hb_149056_010 0.1373654121 - - hypothetical protein CICLE_v10016664mg [Citrus clementina]
19 Hb_001691_190 0.1387855822 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000123_310 0.1410771583 - - PREDICTED: aquaporin TIP1-3 [Jatropha curcas]

Gene co-expression network

sample Hb_003090_060 Hb_003090_060 Hb_111985_060 Hb_111985_060 Hb_003090_060--Hb_111985_060 Hb_002621_030 Hb_002621_030 Hb_003090_060--Hb_002621_030 Hb_079955_010 Hb_079955_010 Hb_003090_060--Hb_079955_010 Hb_005054_300 Hb_005054_300 Hb_003090_060--Hb_005054_300 Hb_151281_010 Hb_151281_010 Hb_003090_060--Hb_151281_010 Hb_004931_050 Hb_004931_050 Hb_003090_060--Hb_004931_050 Hb_111985_060--Hb_005054_300 Hb_011054_030 Hb_011054_030 Hb_111985_060--Hb_011054_030 Hb_021596_070 Hb_021596_070 Hb_111985_060--Hb_021596_070 Hb_111985_060--Hb_002621_030 Hb_008667_020 Hb_008667_020 Hb_111985_060--Hb_008667_020 Hb_002621_030--Hb_079955_010 Hb_131591_010 Hb_131591_010 Hb_002621_030--Hb_131591_010 Hb_000676_030 Hb_000676_030 Hb_002621_030--Hb_000676_030 Hb_002621_030--Hb_151281_010 Hb_079955_010--Hb_151281_010 Hb_079955_010--Hb_131591_010 Hb_011791_010 Hb_011791_010 Hb_079955_010--Hb_011791_010 Hb_079955_010--Hb_111985_060 Hb_005054_300--Hb_011054_030 Hb_009778_030 Hb_009778_030 Hb_005054_300--Hb_009778_030 Hb_000123_310 Hb_000123_310 Hb_005054_300--Hb_000123_310 Hb_002219_090 Hb_002219_090 Hb_005054_300--Hb_002219_090 Hb_151281_010--Hb_131591_010 Hb_151281_010--Hb_000676_030 Hb_151281_010--Hb_011791_010 Hb_001486_130 Hb_001486_130 Hb_004931_050--Hb_001486_130 Hb_004931_050--Hb_111985_060 Hb_001749_020 Hb_001749_020 Hb_004931_050--Hb_001749_020 Hb_004931_050--Hb_079955_010 Hb_001376_020 Hb_001376_020 Hb_004931_050--Hb_001376_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 42.1368 5.01999 5.17389 0.101641 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 12.2295 0.543574

CAGE analysis