Hb_003090_080

Information

Type transcription factor
Description TF Family: MYB
Location Contig3090: 103757-107871
Sequence    

Annotation

kegg
ID rcu:RCOM_0086960
description r2r3-myb transcription factor, putative
nr
ID XP_012087961.1
description PREDICTED: myb-like protein B [Jatropha curcas]
swissprot
ID Q9FDW1
description Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1
trembl
ID A0A067JNW7
description MYB family protein OS=Jatropha curcas GN=JCGZ_25082 PE=4 SV=1
Gene Ontology
ID GO:0003677
description r2r3-myb transcription

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003090_080 0.0 transcription factor TF Family: MYB PREDICTED: myb-like protein B [Jatropha curcas]
2 Hb_106371_010 0.0488666454 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
3 Hb_000160_040 0.0658211821 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
4 Hb_028639_010 0.0760343163 - - transporter, putative [Ricinus communis]
5 Hb_001369_420 0.0761260117 - - PREDICTED: E3 ubiquitin protein ligase RIN2 [Jatropha curcas]
6 Hb_033834_060 0.077506084 - - DNA-binding bromodomain-containing family protein [Populus trichocarpa]
7 Hb_004117_130 0.0792215476 - - PREDICTED: uncharacterized protein LOC105649104 [Jatropha curcas]
8 Hb_020719_030 0.0801232753 - - PREDICTED: ER membrane protein complex subunit 3-like [Jatropha curcas]
9 Hb_030116_020 0.0817306825 - - hypothetical protein POPTR_0016s13630g [Populus trichocarpa]
10 Hb_000023_220 0.0819884753 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 18 isoform X1 [Jatropha curcas]
11 Hb_000700_140 0.0820683076 - - PREDICTED: guanine nucleotide-binding protein-like NSN1 [Jatropha curcas]
12 Hb_000173_510 0.0856685305 - - PREDICTED: AP-5 complex subunit mu [Jatropha curcas]
13 Hb_002783_240 0.0893426377 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
14 Hb_006827_020 0.0893501533 - - conserved hypothetical protein [Ricinus communis]
15 Hb_007044_080 0.0896998851 - - PREDICTED: transmembrane protein 33 homolog [Jatropha curcas]
16 Hb_000538_100 0.0898244887 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001790_020 0.0899020437 - - PREDICTED: uncharacterized protein LOC105642165 [Jatropha curcas]
18 Hb_007059_010 0.0900651668 - - PREDICTED: uncharacterized protein LOC105642418 [Jatropha curcas]
19 Hb_000933_090 0.0907906211 - - PREDICTED: probable protein S-acyltransferase 22 [Jatropha curcas]
20 Hb_009627_010 0.0911827719 - - Protein dom-3, putative [Ricinus communis]

Gene co-expression network

sample Hb_003090_080 Hb_003090_080 Hb_106371_010 Hb_106371_010 Hb_003090_080--Hb_106371_010 Hb_000160_040 Hb_000160_040 Hb_003090_080--Hb_000160_040 Hb_028639_010 Hb_028639_010 Hb_003090_080--Hb_028639_010 Hb_001369_420 Hb_001369_420 Hb_003090_080--Hb_001369_420 Hb_033834_060 Hb_033834_060 Hb_003090_080--Hb_033834_060 Hb_004117_130 Hb_004117_130 Hb_003090_080--Hb_004117_130 Hb_106371_010--Hb_000160_040 Hb_001790_020 Hb_001790_020 Hb_106371_010--Hb_001790_020 Hb_016898_010 Hb_016898_010 Hb_106371_010--Hb_016898_010 Hb_106371_010--Hb_033834_060 Hb_003952_150 Hb_003952_150 Hb_106371_010--Hb_003952_150 Hb_009627_010 Hb_009627_010 Hb_000160_040--Hb_009627_010 Hb_009620_040 Hb_009620_040 Hb_000160_040--Hb_009620_040 Hb_000768_110 Hb_000768_110 Hb_000160_040--Hb_000768_110 Hb_000173_510 Hb_000173_510 Hb_000160_040--Hb_000173_510 Hb_000048_140 Hb_000048_140 Hb_028639_010--Hb_000048_140 Hb_009535_020 Hb_009535_020 Hb_028639_010--Hb_009535_020 Hb_002200_130 Hb_002200_130 Hb_028639_010--Hb_002200_130 Hb_000600_070 Hb_000600_070 Hb_028639_010--Hb_000600_070 Hb_028639_010--Hb_000173_510 Hb_000025_140 Hb_000025_140 Hb_001369_420--Hb_000025_140 Hb_000676_110 Hb_000676_110 Hb_001369_420--Hb_000676_110 Hb_008695_180 Hb_008695_180 Hb_001369_420--Hb_008695_180 Hb_000051_070 Hb_000051_070 Hb_001369_420--Hb_000051_070 Hb_000358_150 Hb_000358_150 Hb_001369_420--Hb_000358_150 Hb_001493_030 Hb_001493_030 Hb_001369_420--Hb_001493_030 Hb_020719_030 Hb_020719_030 Hb_033834_060--Hb_020719_030 Hb_004689_050 Hb_004689_050 Hb_033834_060--Hb_004689_050 Hb_004429_100 Hb_004429_100 Hb_033834_060--Hb_004429_100 Hb_033834_060--Hb_009627_010 Hb_001172_010 Hb_001172_010 Hb_033834_060--Hb_001172_010 Hb_001488_410 Hb_001488_410 Hb_033834_060--Hb_001488_410 Hb_002716_130 Hb_002716_130 Hb_004117_130--Hb_002716_130 Hb_004117_130--Hb_020719_030 Hb_000260_170 Hb_000260_170 Hb_004117_130--Hb_000260_170 Hb_000933_090 Hb_000933_090 Hb_004117_130--Hb_000933_090 Hb_007044_080 Hb_007044_080 Hb_004117_130--Hb_007044_080 Hb_000023_220 Hb_000023_220 Hb_004117_130--Hb_000023_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.4982 7.23271 3.98499 10.5995 20.9509 19.0542
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.875 9.52957 9.96243 13.0999 5.97648

CAGE analysis