Hb_003090_110

Information

Type -
Description -
Location Contig3090: 140628-147377
Sequence    

Annotation

kegg
ID rcu:RCOM_0498030
description hypothetical protein
nr
ID XP_002530401.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SWN2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0498030 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003090_110 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000417_320 0.1851308519 - - hypothetical protein CICLE_v10000333mg [Citrus clementina]
3 Hb_028487_170 0.1946615591 - - PREDICTED: uncharacterized protein LOC105634088 [Jatropha curcas]
4 Hb_014894_010 0.1956806384 - - hypothetical protein CICLE_v10001869mg [Citrus clementina]
5 Hb_100147_010 0.1978159196 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
6 Hb_008147_070 0.2006773089 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
7 Hb_001332_040 0.2038935384 - - PREDICTED: transcription initiation factor IIB [Fragaria vesca subsp. vesca]
8 Hb_028872_110 0.2081218587 - - PREDICTED: uncharacterized protein LOC105644776 [Jatropha curcas]
9 Hb_119494_010 0.2082718834 - - PREDICTED: box C/D snoRNA protein 1 [Jatropha curcas]
10 Hb_000286_060 0.208464366 - - PREDICTED: uncharacterized protein LOC105633357 [Jatropha curcas]
11 Hb_002411_050 0.2084767165 - - PREDICTED: cytochrome P450 4X1-like isoform X1 [Jatropha curcas]
12 Hb_000318_200 0.2086531757 - - PREDICTED: hyoscyamine 6-dioxygenase-like [Jatropha curcas]
13 Hb_084886_010 0.21393293 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002849_200 0.2152597383 - - hypothetical protein JCGZ_15712 [Jatropha curcas]
15 Hb_004079_080 0.2167103648 - - PREDICTED: ras-related protein RHN1-like [Jatropha curcas]
16 Hb_001214_090 0.2189469055 - - PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal [Jatropha curcas]
17 Hb_002042_020 0.2192226088 - - hypothetical protein CICLE_v10001869mg [Citrus clementina]
18 Hb_108329_020 0.2197962827 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
19 Hb_001157_110 0.221561463 - - PREDICTED: formate--tetrahydrofolate ligase [Populus euphratica]
20 Hb_001486_180 0.2220809081 - - hypothetical protein B456_007G260200 [Gossypium raimondii]

Gene co-expression network

sample Hb_003090_110 Hb_003090_110 Hb_000417_320 Hb_000417_320 Hb_003090_110--Hb_000417_320 Hb_028487_170 Hb_028487_170 Hb_003090_110--Hb_028487_170 Hb_014894_010 Hb_014894_010 Hb_003090_110--Hb_014894_010 Hb_100147_010 Hb_100147_010 Hb_003090_110--Hb_100147_010 Hb_008147_070 Hb_008147_070 Hb_003090_110--Hb_008147_070 Hb_001332_040 Hb_001332_040 Hb_003090_110--Hb_001332_040 Hb_000414_110 Hb_000414_110 Hb_000417_320--Hb_000414_110 Hb_119494_010 Hb_119494_010 Hb_000417_320--Hb_119494_010 Hb_000417_320--Hb_014894_010 Hb_000318_200 Hb_000318_200 Hb_000417_320--Hb_000318_200 Hb_039145_010 Hb_039145_010 Hb_000417_320--Hb_039145_010 Hb_028811_010 Hb_028811_010 Hb_000417_320--Hb_028811_010 Hb_005285_030 Hb_005285_030 Hb_028487_170--Hb_005285_030 Hb_000286_060 Hb_000286_060 Hb_028487_170--Hb_000286_060 Hb_000300_430 Hb_000300_430 Hb_028487_170--Hb_000300_430 Hb_001123_160 Hb_001123_160 Hb_028487_170--Hb_001123_160 Hb_000700_040 Hb_000700_040 Hb_028487_170--Hb_000700_040 Hb_004453_080 Hb_004453_080 Hb_028487_170--Hb_004453_080 Hb_001246_030 Hb_001246_030 Hb_014894_010--Hb_001246_030 Hb_014894_010--Hb_119494_010 Hb_002005_100 Hb_002005_100 Hb_014894_010--Hb_002005_100 Hb_001258_060 Hb_001258_060 Hb_014894_010--Hb_001258_060 Hb_004079_080 Hb_004079_080 Hb_014894_010--Hb_004079_080 Hb_008864_090 Hb_008864_090 Hb_014894_010--Hb_008864_090 Hb_000251_030 Hb_000251_030 Hb_100147_010--Hb_000251_030 Hb_000381_110 Hb_000381_110 Hb_100147_010--Hb_000381_110 Hb_029385_010 Hb_029385_010 Hb_100147_010--Hb_029385_010 Hb_001971_060 Hb_001971_060 Hb_100147_010--Hb_001971_060 Hb_001510_020 Hb_001510_020 Hb_100147_010--Hb_001510_020 Hb_001623_160 Hb_001623_160 Hb_100147_010--Hb_001623_160 Hb_001021_080 Hb_001021_080 Hb_008147_070--Hb_001021_080 Hb_008147_070--Hb_119494_010 Hb_077562_030 Hb_077562_030 Hb_008147_070--Hb_077562_030 Hb_109002_020 Hb_109002_020 Hb_008147_070--Hb_109002_020 Hb_002400_410 Hb_002400_410 Hb_008147_070--Hb_002400_410 Hb_172632_110 Hb_172632_110 Hb_008147_070--Hb_172632_110 Hb_001332_040--Hb_000286_060 Hb_003266_100 Hb_003266_100 Hb_001332_040--Hb_003266_100 Hb_016522_010 Hb_016522_010 Hb_001332_040--Hb_016522_010 Hb_000103_270 Hb_000103_270 Hb_001332_040--Hb_000103_270 Hb_000621_020 Hb_000621_020 Hb_001332_040--Hb_000621_020 Hb_004429_090 Hb_004429_090 Hb_001332_040--Hb_004429_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.296685 0.429938 0.0620379 0.610971 0.364201 0.0363296
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.13566 0.446305 0.916394 1.67355 0.579732

CAGE analysis