Hb_003090_150

Information

Type -
Description -
Location Contig3090: 165179-168695
Sequence    

Annotation

kegg
ID pop:POPTR_0016s09980g
description POPTRDRAFT_735668; hypothetical protein
nr
ID XP_012087965.1
description PREDICTED: phosphatidylinositol:ceramide inositolphosphotransferase 1 [Jatropha curcas]
swissprot
ID Q9M325
description Phosphatidylinositol:ceramide inositolphosphotransferase 1 OS=Arabidopsis thaliana GN=IPCS1 PE=2 SV=1
trembl
ID A0A067JKU9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25086 PE=4 SV=1
Gene Ontology
ID GO:0033188
description phosphatidylinositol:ceramide inositolphosphotransferase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32641: 165167-171305 , PASA_asmbl_32642: 165206-166428 , PASA_asmbl_32643: 166551-166956
cDNA
(Sanger)
(ID:Location)		 017_C16.ab1: 166618-171002 , 022_A13.ab1: 166821-171005 , 022_G08.ab1: 169535-171179 , 022_I19.ab1: 169398-171182 , 024_F04.ab1: 168500-171182

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003090_150 0.0 - - PREDICTED: phosphatidylinositol:ceramide inositolphosphotransferase 1 [Jatropha curcas]
2 Hb_000671_060 0.0914933441 - - protein binding protein, putative [Ricinus communis]
3 Hb_001571_030 0.1067116212 - - PREDICTED: uncharacterized protein LOC105640040 isoform X1 [Jatropha curcas]
4 Hb_002030_110 0.1112174068 - - PREDICTED: RING-H2 finger protein ATL32-like [Jatropha curcas]
5 Hb_001894_160 0.1278676933 - - conserved hypothetical protein [Ricinus communis]
6 Hb_011671_110 0.1298910724 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
7 Hb_033930_010 0.1338601603 - - PREDICTED: uncharacterized protein LOC105635519 [Jatropha curcas]
8 Hb_005394_010 0.1349794874 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
9 Hb_001102_090 0.1360132044 - - PREDICTED: mitogen-activated protein kinase 19 [Jatropha curcas]
10 Hb_001196_080 0.1373079533 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
11 Hb_001863_340 0.1376934524 - - PREDICTED: probable pectin methyltransferase QUA2 [Jatropha curcas]
12 Hb_000805_200 0.1379498215 - - PREDICTED: telomere repeat-binding protein 2 isoform X2 [Jatropha curcas]
13 Hb_012305_140 0.1389364036 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 5-like isoform X1 [Jatropha curcas]
14 Hb_005694_130 0.1390610395 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
15 Hb_032202_050 0.1393629517 transcription factor TF Family: TCP conserved hypothetical protein [Ricinus communis]
16 Hb_015026_020 0.1403267638 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os07g0563300 [Jatropha curcas]
17 Hb_020805_100 0.1426710175 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1b [Jatropha curcas]
18 Hb_001776_200 0.1431086959 - - PREDICTED: COP9 signalosome complex subunit 2 isoform X2 [Pyrus x bretschneideri]
19 Hb_025905_010 0.1474148843 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
20 Hb_005332_140 0.149497245 - - PREDICTED: uncharacterized membrane protein At3g27390 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_003090_150 Hb_003090_150 Hb_000671_060 Hb_000671_060 Hb_003090_150--Hb_000671_060 Hb_001571_030 Hb_001571_030 Hb_003090_150--Hb_001571_030 Hb_002030_110 Hb_002030_110 Hb_003090_150--Hb_002030_110 Hb_001894_160 Hb_001894_160 Hb_003090_150--Hb_001894_160 Hb_011671_110 Hb_011671_110 Hb_003090_150--Hb_011671_110 Hb_033930_010 Hb_033930_010 Hb_003090_150--Hb_033930_010 Hb_000163_230 Hb_000163_230 Hb_000671_060--Hb_000163_230 Hb_002311_140 Hb_002311_140 Hb_000671_060--Hb_002311_140 Hb_012305_140 Hb_012305_140 Hb_000671_060--Hb_012305_140 Hb_001196_080 Hb_001196_080 Hb_000671_060--Hb_001196_080 Hb_000261_280 Hb_000261_280 Hb_000671_060--Hb_000261_280 Hb_001250_040 Hb_001250_040 Hb_001571_030--Hb_001250_040 Hb_000805_200 Hb_000805_200 Hb_001571_030--Hb_000805_200 Hb_007576_070 Hb_007576_070 Hb_001571_030--Hb_007576_070 Hb_027380_210 Hb_027380_210 Hb_001571_030--Hb_027380_210 Hb_000136_020 Hb_000136_020 Hb_001571_030--Hb_000136_020 Hb_001863_340 Hb_001863_340 Hb_002030_110--Hb_001863_340 Hb_002030_110--Hb_001894_160 Hb_000622_210 Hb_000622_210 Hb_002030_110--Hb_000622_210 Hb_002030_110--Hb_033930_010 Hb_000680_180 Hb_000680_180 Hb_002030_110--Hb_000680_180 Hb_001894_160--Hb_011671_110 Hb_005941_020 Hb_005941_020 Hb_001894_160--Hb_005941_020 Hb_001894_160--Hb_033930_010 Hb_000928_250 Hb_000928_250 Hb_001894_160--Hb_000928_250 Hb_015026_020 Hb_015026_020 Hb_001894_160--Hb_015026_020 Hb_001894_160--Hb_000622_210 Hb_011671_110--Hb_005941_020 Hb_011671_110--Hb_033930_010 Hb_011671_110--Hb_015026_020 Hb_001776_200 Hb_001776_200 Hb_011671_110--Hb_001776_200 Hb_005394_010 Hb_005394_010 Hb_011671_110--Hb_005394_010 Hb_033930_010--Hb_005941_020 Hb_000318_410 Hb_000318_410 Hb_033930_010--Hb_000318_410 Hb_033930_010--Hb_000622_210 Hb_000086_640 Hb_000086_640 Hb_033930_010--Hb_000086_640
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.2234 220.33 224.021 105.091 76.3379 40.0915
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.7429 14.6009 17.8646 20.4126 87.4175

CAGE analysis