Hb_003090_170

Information

Type -
Description -
Location Contig3090: 176146-177002
Sequence    

Annotation

kegg
ID pop:POPTR_0016s09990g
description POPTRDRAFT_667937; hypothetical protein
nr
ID XP_012087966.1
description PREDICTED: uncharacterized protein LOC105646673 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JNX0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25087 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32645: 176718-177034
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003090_170 0.0 - - PREDICTED: uncharacterized protein LOC105646673 [Jatropha curcas]
2 Hb_186312_010 0.1164139984 - - PREDICTED: O-acyltransferase WSD1-like [Populus euphratica]
3 Hb_007103_020 0.1360569686 - - hypothetical protein POPTR_0007s04191g [Populus trichocarpa]
4 Hb_000258_230 0.1593950277 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000068_040 0.1597741495 - - Inter-alpha-trypsin inhibitor heavy chain H3 precursor, putative [Ricinus communis]
6 Hb_005790_010 0.1607510063 - - hypothetical protein POPTR_0004s24080g [Populus trichocarpa]
7 Hb_026050_010 0.1676678512 - - protein phosphatase 2c, putative [Ricinus communis]
8 Hb_000813_090 0.1681381729 - - hypothetical protein CARUB_v10019318mg [Capsella rubella]
9 Hb_027892_050 0.1728302792 - - hypothetical protein PHAVU_009G226400g [Phaseolus vulgaris]
10 Hb_152277_010 0.1747131692 - - PREDICTED: 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like [Jatropha curcas]
11 Hb_002250_140 0.17788303 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 6 isoform X1 [Populus euphratica]
12 Hb_000369_040 0.1787600527 - - Ankyrin repeat family protein, putative [Theobroma cacao]
13 Hb_002785_010 0.1796048919 transcription factor TF Family: MYB PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
14 Hb_032202_010 0.1800806433 - - PREDICTED: subtilisin-like protease SBT1.1 [Jatropha curcas]
15 Hb_002066_010 0.1810968193 - - PREDICTED: acetylglutamate kinase, chloroplastic [Jatropha curcas]
16 Hb_000201_010 0.1814343515 - - unnamed protein product [Vitis vinifera]
17 Hb_000956_100 0.1829682909 - - Cucumisin precursor, putative [Ricinus communis]
18 Hb_002335_010 0.1853418297 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
19 Hb_009771_040 0.1892606766 - - hypothetical protein JCGZ_25039 [Jatropha curcas]
20 Hb_000041_160 0.1901665571 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_003090_170 Hb_003090_170 Hb_186312_010 Hb_186312_010 Hb_003090_170--Hb_186312_010 Hb_007103_020 Hb_007103_020 Hb_003090_170--Hb_007103_020 Hb_000258_230 Hb_000258_230 Hb_003090_170--Hb_000258_230 Hb_000068_040 Hb_000068_040 Hb_003090_170--Hb_000068_040 Hb_005790_010 Hb_005790_010 Hb_003090_170--Hb_005790_010 Hb_026050_010 Hb_026050_010 Hb_003090_170--Hb_026050_010 Hb_002076_030 Hb_002076_030 Hb_186312_010--Hb_002076_030 Hb_000369_040 Hb_000369_040 Hb_186312_010--Hb_000369_040 Hb_002631_110 Hb_002631_110 Hb_186312_010--Hb_002631_110 Hb_032202_010 Hb_032202_010 Hb_186312_010--Hb_032202_010 Hb_186312_010--Hb_000068_040 Hb_007103_020--Hb_000258_230 Hb_027892_050 Hb_027892_050 Hb_007103_020--Hb_027892_050 Hb_009771_040 Hb_009771_040 Hb_007103_020--Hb_009771_040 Hb_152277_010 Hb_152277_010 Hb_007103_020--Hb_152277_010 Hb_002250_140 Hb_002250_140 Hb_007103_020--Hb_002250_140 Hb_007103_020--Hb_005790_010 Hb_000258_230--Hb_009771_040 Hb_000258_230--Hb_002250_140 Hb_000258_230--Hb_152277_010 Hb_000258_230--Hb_026050_010 Hb_000201_010 Hb_000201_010 Hb_000258_230--Hb_000201_010 Hb_004450_030 Hb_004450_030 Hb_000068_040--Hb_004450_030 Hb_000068_040--Hb_000258_230 Hb_000068_040--Hb_005790_010 Hb_003209_090 Hb_003209_090 Hb_000068_040--Hb_003209_090 Hb_005790_010--Hb_152277_010 Hb_005790_010--Hb_000258_230 Hb_001158_250 Hb_001158_250 Hb_005790_010--Hb_001158_250 Hb_000622_030 Hb_000622_030 Hb_005790_010--Hb_000622_030 Hb_001232_040 Hb_001232_040 Hb_005790_010--Hb_001232_040 Hb_026050_010--Hb_009771_040 Hb_026050_010--Hb_002250_140 Hb_000574_230 Hb_000574_230 Hb_026050_010--Hb_000574_230 Hb_007257_070 Hb_007257_070 Hb_026050_010--Hb_007257_070 Hb_010174_200 Hb_010174_200 Hb_026050_010--Hb_010174_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.55642 0.360713 1.58408 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.210189 0 0.0873625 1.57247

CAGE analysis