Hb_003090_190

Information

Type -
Description -
Location Contig3090: 194247-195423
Sequence    

Annotation

kegg
ID cam:101515262
description 18.5 kDa class I heat shock protein-like
nr
ID XP_010273703.1
description PREDICTED: 17.3 kDa class I heat shock protein-like [Nelumbo nucifera]
swissprot
ID P27879
description 18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1
trembl
ID A0A067JKL4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25090 PE=3 SV=1
Gene Ontology
ID GO:0009408
description kda class i heat shock

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32647: 194269-195464 , PASA_asmbl_32648: 194269-195418
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003090_190 0.0 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Nelumbo nucifera]
2 Hb_000165_260 0.0465085428 - - PREDICTED: uncharacterized protein LOC105133752 isoform X2 [Populus euphratica]
3 Hb_000328_030 0.0660905801 - - PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming] [Jatropha curcas]
4 Hb_000245_110 0.0746522355 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 12-like [Jatropha curcas]
5 Hb_000311_100 0.0781200957 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000012_380 0.080499892 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
7 Hb_015807_090 0.0822961147 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
8 Hb_007227_030 0.0832841877 - - hypothetical protein JCGZ_24975 [Jatropha curcas]
9 Hb_000086_490 0.084740561 - - cellulose synthase [Populus tomentosa]
10 Hb_002078_180 0.0857787918 - - PREDICTED: 65-kDa microtubule-associated protein 8 [Jatropha curcas]
11 Hb_001712_030 0.0865662066 - - PREDICTED: lysine-rich arabinogalactan protein 19 [Jatropha curcas]
12 Hb_008001_030 0.0869543575 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
13 Hb_002835_360 0.0872250638 transcription factor TF Family: MYB hypothetical protein POPTR_0015s09430g [Populus trichocarpa]
14 Hb_042083_010 0.0893116702 - - PREDICTED: cellulose synthase A catalytic subunit 8 [UDP-forming] [Jatropha curcas]
15 Hb_001514_050 0.0919372111 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
16 Hb_001377_230 0.0942831924 - - PREDICTED: uncharacterized protein LOC105135159 [Populus euphratica]
17 Hb_005523_030 0.0958740399 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
18 Hb_026124_020 0.0961240823 - - PREDICTED: uncharacterized protein LOC105644241 isoform X1 [Jatropha curcas]
19 Hb_001366_360 0.1002205473 - - catalytic, putative [Ricinus communis]
20 Hb_005686_040 0.1011586331 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003090_190 Hb_003090_190 Hb_000165_260 Hb_000165_260 Hb_003090_190--Hb_000165_260 Hb_000328_030 Hb_000328_030 Hb_003090_190--Hb_000328_030 Hb_000245_110 Hb_000245_110 Hb_003090_190--Hb_000245_110 Hb_000311_100 Hb_000311_100 Hb_003090_190--Hb_000311_100 Hb_000012_380 Hb_000012_380 Hb_003090_190--Hb_000012_380 Hb_015807_090 Hb_015807_090 Hb_003090_190--Hb_015807_090 Hb_000165_260--Hb_000328_030 Hb_000165_260--Hb_000311_100 Hb_007227_030 Hb_007227_030 Hb_000165_260--Hb_007227_030 Hb_001712_030 Hb_001712_030 Hb_000165_260--Hb_001712_030 Hb_000086_490 Hb_000086_490 Hb_000165_260--Hb_000086_490 Hb_000328_030--Hb_000086_490 Hb_001377_230 Hb_001377_230 Hb_000328_030--Hb_001377_230 Hb_042083_010 Hb_042083_010 Hb_000328_030--Hb_042083_010 Hb_005523_030 Hb_005523_030 Hb_000328_030--Hb_005523_030 Hb_000328_030--Hb_015807_090 Hb_000245_110--Hb_000012_380 Hb_000245_110--Hb_042083_010 Hb_000245_110--Hb_000328_030 Hb_026124_020 Hb_026124_020 Hb_000245_110--Hb_026124_020 Hb_005614_020 Hb_005614_020 Hb_000245_110--Hb_005614_020 Hb_005827_020 Hb_005827_020 Hb_000311_100--Hb_005827_020 Hb_000311_100--Hb_001712_030 Hb_000311_100--Hb_000328_030 Hb_008001_030 Hb_008001_030 Hb_000311_100--Hb_008001_030 Hb_000012_380--Hb_026124_020 Hb_148262_010 Hb_148262_010 Hb_000012_380--Hb_148262_010 Hb_000012_380--Hb_042083_010 Hb_000012_380--Hb_000328_030 Hb_015807_090--Hb_000086_490 Hb_015807_090--Hb_005523_030 Hb_003747_160 Hb_003747_160 Hb_015807_090--Hb_003747_160 Hb_002078_180 Hb_002078_180 Hb_015807_090--Hb_002078_180 Hb_001051_060 Hb_001051_060 Hb_015807_090--Hb_001051_060 Hb_005686_040 Hb_005686_040 Hb_015807_090--Hb_005686_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.62582 2.00331 21.5042 0 0.098131
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0846056 0 0 0.189696 16.7688

CAGE analysis