Hb_003090_230

Information

Type -
Description -
Location Contig3090: 226233-227052
Sequence    

Annotation

kegg
ID rcu:RCOM_0358800
description hypothetical protein
nr
ID XP_002534082.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8LGG8
description Universal stress protein A-like protein OS=Arabidopsis thaliana GN=At3g01520 PE=1 SV=2
trembl
ID B9T763
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0358800 PE=4 SV=1
Gene Ontology
ID GO:0005886
description enod18 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32650: 226262-227229
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003090_230 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000676_380 0.0776606865 - - cytochrome P450 family protein [Populus trichocarpa]
3 Hb_020805_110 0.0972825237 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
4 Hb_009711_040 0.1138636792 - - PREDICTED: uncharacterized protein LOC105647789 [Jatropha curcas]
5 Hb_021418_010 0.1156416559 - - PREDICTED: probable pectate lyase 12 [Prunus mume]
6 Hb_004875_040 0.1201148302 - - PREDICTED: uncharacterized protein LOC105645797 [Jatropha curcas]
7 Hb_001596_030 0.121205308 - - PREDICTED: uncharacterized protein LOC105141672 [Populus euphratica]
8 Hb_001522_050 0.1218403486 - - PREDICTED: CLAVATA3/ESR (CLE)-related protein 25 [Jatropha curcas]
9 Hb_000380_210 0.1295709172 - - Cyclic nucleotide-gated channel 15 [Theobroma cacao]
10 Hb_005144_180 0.1301322815 - - PREDICTED: protein enabled homolog [Populus euphratica]
11 Hb_003171_070 0.1343042172 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Citrus sinensis]
12 Hb_001856_150 0.1347418119 - - -
13 Hb_081282_010 0.1349345286 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
14 Hb_003058_180 0.1424532473 transcription factor TF Family: HSF hypothetical protein POPTR_0001s28040g [Populus trichocarpa]
15 Hb_009780_110 0.1438442046 - - PREDICTED: protein RSI-1 [Cicer arietinum]
16 Hb_022181_010 0.1459126233 - - PREDICTED: peroxidase 19 [Jatropha curcas]
17 Hb_006120_010 0.1464465936 - - invertase inhibitor [Manihot esculenta]
18 Hb_003435_070 0.1479016051 - - PREDICTED: probable pectate lyase 12 isoform X3 [Jatropha curcas]
19 Hb_161346_010 0.1490802517 - - PREDICTED: germin-like protein subfamily 1 member 20 [Populus euphratica]
20 Hb_008727_030 0.1517075399 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003090_230 Hb_003090_230 Hb_000676_380 Hb_000676_380 Hb_003090_230--Hb_000676_380 Hb_020805_110 Hb_020805_110 Hb_003090_230--Hb_020805_110 Hb_009711_040 Hb_009711_040 Hb_003090_230--Hb_009711_040 Hb_021418_010 Hb_021418_010 Hb_003090_230--Hb_021418_010 Hb_004875_040 Hb_004875_040 Hb_003090_230--Hb_004875_040 Hb_001596_030 Hb_001596_030 Hb_003090_230--Hb_001596_030 Hb_000676_380--Hb_020805_110 Hb_003171_070 Hb_003171_070 Hb_000676_380--Hb_003171_070 Hb_001856_150 Hb_001856_150 Hb_000676_380--Hb_001856_150 Hb_000676_380--Hb_004875_040 Hb_000676_380--Hb_009711_040 Hb_020805_110--Hb_009711_040 Hb_020805_110--Hb_004875_040 Hb_000306_050 Hb_000306_050 Hb_020805_110--Hb_000306_050 Hb_020805_110--Hb_001856_150 Hb_000417_350 Hb_000417_350 Hb_009711_040--Hb_000417_350 Hb_009711_040--Hb_003171_070 Hb_009711_040--Hb_000306_050 Hb_000077_450 Hb_000077_450 Hb_021418_010--Hb_000077_450 Hb_081282_010 Hb_081282_010 Hb_021418_010--Hb_081282_010 Hb_021418_010--Hb_001596_030 Hb_011452_020 Hb_011452_020 Hb_021418_010--Hb_011452_020 Hb_007181_080 Hb_007181_080 Hb_021418_010--Hb_007181_080 Hb_148817_010 Hb_148817_010 Hb_004875_040--Hb_148817_010 Hb_004875_040--Hb_001856_150 Hb_000098_210 Hb_000098_210 Hb_004875_040--Hb_000098_210 Hb_006314_020 Hb_006314_020 Hb_004875_040--Hb_006314_020 Hb_001596_030--Hb_081282_010 Hb_001596_030--Hb_000306_050 Hb_001242_020 Hb_001242_020 Hb_001596_030--Hb_001242_020 Hb_000540_030 Hb_000540_030 Hb_001596_030--Hb_000540_030 Hb_001596_030--Hb_020805_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.20433 14.5805 6.40482 118.366 0.581113 1.62791
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.757949 0.397 0.33878 153.759 2.43153

CAGE analysis