Hb_003092_030

Information

Type -
Description -
Location Contig3092: 40667-49597
Sequence    

Annotation

kegg
ID rcu:RCOM_0004130
description ATP binding protein, putative (EC:2.7.10.2)
nr
ID XP_012081177.1
description PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 [Jatropha curcas]
swissprot
ID Q9ASQ5
description Calmodulin-binding receptor-like cytoplasmic kinase 3 OS=Arabidopsis thaliana GN=CRCK3 PE=2 SV=1
trembl
ID A0A067K2B8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17019 PE=3 SV=1
Gene Ontology
ID GO:0004674
description calmodulin-binding receptor-like cytoplasmic kinase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32669: 41443-62857 , PASA_asmbl_32670: 41369-62857 , PASA_asmbl_32673: 42173-42358
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003092_030 0.0 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 [Jatropha curcas]
2 Hb_006198_080 0.0492784168 - - hypothetical protein MIMGU_mgv1a013452mg [Erythranthe guttata]
3 Hb_000700_110 0.0616608906 - - Vesicle-associated membrane protein, putative [Ricinus communis]
4 Hb_021238_050 0.0718312614 - - conserved hypothetical protein [Ricinus communis]
5 Hb_037887_010 0.0729246075 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
6 Hb_000898_050 0.0741780722 - - -
7 Hb_006429_010 0.07989558 - - PREDICTED: uncharacterized protein LOC105639724 [Jatropha curcas]
8 Hb_000107_310 0.0814200762 - - PREDICTED: pseudouridine-metabolizing bifunctional protein C1861.05 [Jatropha curcas]
9 Hb_000347_200 0.0829105893 - - lsm1, putative [Ricinus communis]
10 Hb_148644_010 0.0831920708 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
11 Hb_001205_150 0.0841145627 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
12 Hb_002477_330 0.0845581128 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1-like [Jatropha curcas]
13 Hb_092337_010 0.0853089145 - - PREDICTED: actin-depolymerizing factor 2-like [Nelumbo nucifera]
14 Hb_000976_410 0.0860308016 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
15 Hb_000479_190 0.0873455341 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001344_010 0.0879902948 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI11 [Jatropha curcas]
17 Hb_000692_220 0.0905474277 - - hypothetical protein B456_002G120900 [Gossypium raimondii]
18 Hb_004705_100 0.0917419993 - - PREDICTED: inactive leucine-rich repeat receptor-like protein kinase CORYNE [Jatropha curcas]
19 Hb_000041_050 0.0927566981 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
20 Hb_001584_190 0.0935074915 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]

Gene co-expression network

sample Hb_003092_030 Hb_003092_030 Hb_006198_080 Hb_006198_080 Hb_003092_030--Hb_006198_080 Hb_000700_110 Hb_000700_110 Hb_003092_030--Hb_000700_110 Hb_021238_050 Hb_021238_050 Hb_003092_030--Hb_021238_050 Hb_037887_010 Hb_037887_010 Hb_003092_030--Hb_037887_010 Hb_000898_050 Hb_000898_050 Hb_003092_030--Hb_000898_050 Hb_006429_010 Hb_006429_010 Hb_003092_030--Hb_006429_010 Hb_006198_080--Hb_000700_110 Hb_000347_200 Hb_000347_200 Hb_006198_080--Hb_000347_200 Hb_006198_080--Hb_037887_010 Hb_000107_310 Hb_000107_310 Hb_006198_080--Hb_000107_310 Hb_006198_080--Hb_021238_050 Hb_148644_010 Hb_148644_010 Hb_000700_110--Hb_148644_010 Hb_000041_050 Hb_000041_050 Hb_000700_110--Hb_000041_050 Hb_000700_110--Hb_000347_200 Hb_002477_330 Hb_002477_330 Hb_000700_110--Hb_002477_330 Hb_021238_050--Hb_037887_010 Hb_000056_260 Hb_000056_260 Hb_021238_050--Hb_000056_260 Hb_000326_090 Hb_000326_090 Hb_021238_050--Hb_000326_090 Hb_002296_040 Hb_002296_040 Hb_021238_050--Hb_002296_040 Hb_000083_170 Hb_000083_170 Hb_037887_010--Hb_000083_170 Hb_037887_010--Hb_000898_050 Hb_037887_010--Hb_006429_010 Hb_001584_190 Hb_001584_190 Hb_037887_010--Hb_001584_190 Hb_001114_130 Hb_001114_130 Hb_000898_050--Hb_001114_130 Hb_000856_260 Hb_000856_260 Hb_000898_050--Hb_000856_260 Hb_000898_050--Hb_006198_080 Hb_000898_050--Hb_006429_010 Hb_000479_190 Hb_000479_190 Hb_006429_010--Hb_000479_190 Hb_001205_150 Hb_001205_150 Hb_006429_010--Hb_001205_150 Hb_004218_110 Hb_004218_110 Hb_006429_010--Hb_004218_110 Hb_002759_060 Hb_002759_060 Hb_006429_010--Hb_002759_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.1659 8.9046 5.77093 22.6914 13.7012 32.2964
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.797 23.3005 29.3119 14.7238 8.92952

CAGE analysis