Hb_003092_050

Information

Type -
Description -
Location Contig3092: 76092-81535
Sequence    

Annotation

kegg
ID pop:POPTR_0006s06280g
description chloride channel-like family protein
nr
ID XP_012081174.1
description PREDICTED: putative chloride channel-like protein CLC-g [Jatropha curcas]
swissprot
ID P60300
description Putative chloride channel-like protein CLC-g OS=Arabidopsis thaliana GN=CBSCLC6 PE=3 SV=2
trembl
ID A0A067KEI8
description Chloride channel protein OS=Jatropha curcas GN=JCGZ_17016 PE=3 SV=1
Gene Ontology
ID GO:0005622
description chloride channel-like protein clc-g

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32674: 76294-77179 , PASA_asmbl_32675: 76298-77254 , PASA_asmbl_32677: 78474-79352 , PASA_asmbl_32678: 79353-81329
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003092_050 0.0 - - PREDICTED: putative chloride channel-like protein CLC-g [Jatropha curcas]
2 Hb_001894_010 0.1205256037 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Jatropha curcas]
3 Hb_000215_250 0.1245735159 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
4 Hb_000107_550 0.1289945121 - - PREDICTED: monosaccharide-sensing protein 2 [Jatropha curcas]
5 Hb_000139_510 0.1313490612 - - PREDICTED: probable E3 ubiquitin-protein ligase LUL4 isoform X1 [Jatropha curcas]
6 Hb_005181_060 0.1381378841 - - ATP-citrate synthase, putative [Ricinus communis]
7 Hb_013848_030 0.1442897224 - - PREDICTED: probable aminotransferase TAT2 [Jatropha curcas]
8 Hb_005485_070 0.1443745763 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
9 Hb_153257_010 0.1480078154 - - PREDICTED: hippocampus abundant transcript-like protein 1 [Jatropha curcas]
10 Hb_003106_110 0.1496845005 - - betaine aldehyde dehydrogenase 1, chloroplastic [Jatropha curcas]
11 Hb_001486_060 0.1527622326 - - PREDICTED: uncharacterized protein LOC105632622 [Jatropha curcas]
12 Hb_000590_070 0.1537708602 - - PREDICTED: beta-hexosaminidase 1 [Jatropha curcas]
13 Hb_005288_210 0.1546933019 - - hypothetical protein VITISV_017217 [Vitis vinifera]
14 Hb_002811_020 0.1571531877 - - Cysteine synthase [Morus notabilis]
15 Hb_002893_190 0.1573374853 - - unnamed protein product [Coffea canephora]
16 Hb_001971_050 0.1578045444 - - WD-repeat protein, putative [Ricinus communis]
17 Hb_015306_010 0.1579520477 - - PREDICTED: uncharacterized protein LOC105636357 [Jatropha curcas]
18 Hb_000959_120 0.1587589407 - - PREDICTED: protein BRASSINOSTEROID INSENSITIVE 1 [Jatropha curcas]
19 Hb_000116_240 0.1597038161 transcription factor TF Family: HB homeobox-leucine zipper family protein [Populus trichocarpa]
20 Hb_002518_180 0.1601612622 - - hypothetical protein POPTR_0001s25460g [Populus trichocarpa]

Gene co-expression network

sample Hb_003092_050 Hb_003092_050 Hb_001894_010 Hb_001894_010 Hb_003092_050--Hb_001894_010 Hb_000215_250 Hb_000215_250 Hb_003092_050--Hb_000215_250 Hb_000107_550 Hb_000107_550 Hb_003092_050--Hb_000107_550 Hb_000139_510 Hb_000139_510 Hb_003092_050--Hb_000139_510 Hb_005181_060 Hb_005181_060 Hb_003092_050--Hb_005181_060 Hb_013848_030 Hb_013848_030 Hb_003092_050--Hb_013848_030 Hb_005485_070 Hb_005485_070 Hb_001894_010--Hb_005485_070 Hb_000590_070 Hb_000590_070 Hb_001894_010--Hb_000590_070 Hb_002527_060 Hb_002527_060 Hb_001894_010--Hb_002527_060 Hb_000120_740 Hb_000120_740 Hb_001894_010--Hb_000120_740 Hb_036388_010 Hb_036388_010 Hb_001894_010--Hb_036388_010 Hb_002420_010 Hb_002420_010 Hb_000215_250--Hb_002420_010 Hb_002811_020 Hb_002811_020 Hb_000215_250--Hb_002811_020 Hb_000215_250--Hb_013848_030 Hb_001493_020 Hb_001493_020 Hb_000215_250--Hb_001493_020 Hb_082683_010 Hb_082683_010 Hb_000215_250--Hb_082683_010 Hb_002740_100 Hb_002740_100 Hb_000107_550--Hb_002740_100 Hb_002685_220 Hb_002685_220 Hb_000107_550--Hb_002685_220 Hb_002110_090 Hb_002110_090 Hb_000107_550--Hb_002110_090 Hb_000181_230 Hb_000181_230 Hb_000107_550--Hb_000181_230 Hb_003006_080 Hb_003006_080 Hb_000107_550--Hb_003006_080 Hb_153257_010 Hb_153257_010 Hb_000139_510--Hb_153257_010 Hb_002833_020 Hb_002833_020 Hb_000139_510--Hb_002833_020 Hb_000574_370 Hb_000574_370 Hb_000139_510--Hb_000574_370 Hb_004864_020 Hb_004864_020 Hb_000139_510--Hb_004864_020 Hb_000085_380 Hb_000085_380 Hb_000139_510--Hb_000085_380 Hb_005181_060--Hb_000590_070 Hb_005181_060--Hb_002527_060 Hb_002026_070 Hb_002026_070 Hb_005181_060--Hb_002026_070 Hb_005181_060--Hb_001894_010 Hb_005181_060--Hb_005485_070 Hb_000473_030 Hb_000473_030 Hb_005181_060--Hb_000473_030 Hb_003640_010 Hb_003640_010 Hb_013848_030--Hb_003640_010 Hb_188281_050 Hb_188281_050 Hb_013848_030--Hb_188281_050 Hb_001189_100 Hb_001189_100 Hb_013848_030--Hb_001189_100 Hb_003085_080 Hb_003085_080 Hb_013848_030--Hb_003085_080 Hb_013848_030--Hb_002811_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.1752 2.377 2.51169 6.21667 0.56343 0.489799
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0973779 0.175154 0.0838181 6.78054 5.25898

CAGE analysis