Hb_003093_040

Information

Type -
Description -
Location Contig3093: 62911-72566
Sequence    

Annotation

kegg
ID rcu:RCOM_0035800
description nucleolar complex protein, putative
nr
ID XP_012074823.1
description PREDICTED: nucleolar complex protein 4 homolog isoform X1 [Jatropha curcas]
swissprot
ID Q6NU91
description Nucleolar complex protein 4 homolog B OS=Xenopus laevis GN=noc4l-b PE=2 SV=1
trembl
ID A0A067KHD3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08980 PE=4 SV=1
Gene Ontology
ID GO:0005654
description nucleolar complex protein 4 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32691: 63275-65116 , PASA_asmbl_32692: 65445-69802 , PASA_asmbl_32693: 66157-66404 , PASA_asmbl_32696: 70534-72377 , PASA_asmbl_32697: 71832-72174
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003093_040 0.0 - - PREDICTED: nucleolar complex protein 4 homolog isoform X1 [Jatropha curcas]
2 Hb_000011_270 0.0569261589 - - PREDICTED: pumilio homolog 23 [Jatropha curcas]
3 Hb_000175_410 0.062601556 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
4 Hb_001221_180 0.0694246981 - - calcineurin-like phosphoesterase [Manihot esculenta]
5 Hb_001999_140 0.0749513378 - - PREDICTED: anthranilate synthase alpha subunit 2, chloroplastic isoform X2 [Jatropha curcas]
6 Hb_002374_230 0.0750769356 - - PREDICTED: centromere-associated protein E [Jatropha curcas]
7 Hb_000661_120 0.0816857129 - - cap binding protein, putative [Ricinus communis]
8 Hb_004619_060 0.0838595114 - - PREDICTED: uncharacterized protein At1g10890-like [Nelumbo nucifera]
9 Hb_008054_040 0.0839228272 - - PREDICTED: cullin-4 [Jatropha curcas]
10 Hb_000085_210 0.0851333935 - - DNA topoisomerase type I, putative [Ricinus communis]
11 Hb_030414_040 0.0859288794 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X1 [Jatropha curcas]
12 Hb_000996_020 0.0861456161 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
13 Hb_002357_070 0.0889958395 transcription factor TF Family: PHD PREDICTED: protein strawberry notch homolog 1 [Jatropha curcas]
14 Hb_000976_110 0.0895933874 - - PREDICTED: KRR1 small subunit processome component homolog [Jatropha curcas]
15 Hb_000111_170 0.0896331535 - - PREDICTED: uncharacterized protein LOC105631234 isoform X1 [Jatropha curcas]
16 Hb_000795_040 0.0898001208 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
17 Hb_007955_050 0.0898267428 - - PREDICTED: multiple RNA-binding domain-containing protein 1 [Jatropha curcas]
18 Hb_004324_330 0.090224227 - - PREDICTED: uncharacterized protein LOC105648374 [Jatropha curcas]
19 Hb_008206_080 0.0905575871 - - PREDICTED: probable cyclic nucleotide-gated ion channel 17 [Jatropha curcas]
20 Hb_001008_070 0.0905988908 - - PREDICTED: periodic tryptophan protein 2 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_003093_040 Hb_003093_040 Hb_000011_270 Hb_000011_270 Hb_003093_040--Hb_000011_270 Hb_000175_410 Hb_000175_410 Hb_003093_040--Hb_000175_410 Hb_001221_180 Hb_001221_180 Hb_003093_040--Hb_001221_180 Hb_001999_140 Hb_001999_140 Hb_003093_040--Hb_001999_140 Hb_002374_230 Hb_002374_230 Hb_003093_040--Hb_002374_230 Hb_000661_120 Hb_000661_120 Hb_003093_040--Hb_000661_120 Hb_000011_270--Hb_001221_180 Hb_000568_050 Hb_000568_050 Hb_000011_270--Hb_000568_050 Hb_000011_270--Hb_000175_410 Hb_002357_070 Hb_002357_070 Hb_000011_270--Hb_002357_070 Hb_000001_170 Hb_000001_170 Hb_000011_270--Hb_000001_170 Hb_003186_020 Hb_003186_020 Hb_000175_410--Hb_003186_020 Hb_013358_070 Hb_013358_070 Hb_000175_410--Hb_013358_070 Hb_031284_010 Hb_031284_010 Hb_000175_410--Hb_031284_010 Hb_000523_080 Hb_000523_080 Hb_000175_410--Hb_000523_080 Hb_001221_180--Hb_002357_070 Hb_019840_030 Hb_019840_030 Hb_001221_180--Hb_019840_030 Hb_060980_010 Hb_060980_010 Hb_001221_180--Hb_060980_010 Hb_001221_180--Hb_000568_050 Hb_000826_070 Hb_000826_070 Hb_001999_140--Hb_000826_070 Hb_000664_120 Hb_000664_120 Hb_001999_140--Hb_000664_120 Hb_013459_020 Hb_013459_020 Hb_001999_140--Hb_013459_020 Hb_001999_140--Hb_001221_180 Hb_001999_140--Hb_002357_070 Hb_003159_140 Hb_003159_140 Hb_002374_230--Hb_003159_140 Hb_005542_130 Hb_005542_130 Hb_002374_230--Hb_005542_130 Hb_002374_230--Hb_000175_410 Hb_030414_040 Hb_030414_040 Hb_002374_230--Hb_030414_040 Hb_001158_160 Hb_001158_160 Hb_002374_230--Hb_001158_160 Hb_000996_020 Hb_000996_020 Hb_000661_120--Hb_000996_020 Hb_000445_060 Hb_000445_060 Hb_000661_120--Hb_000445_060 Hb_000373_170 Hb_000373_170 Hb_000661_120--Hb_000373_170 Hb_000340_030 Hb_000340_030 Hb_000661_120--Hb_000340_030 Hb_000529_060 Hb_000529_060 Hb_000661_120--Hb_000529_060 Hb_000868_120 Hb_000868_120 Hb_000661_120--Hb_000868_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.52155 6.40737 9.39555 5.23699 5.31653 4.7267
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.03058 3.92669 2.20633 8.76453 8.92811

CAGE analysis