Hb_003096_050

Information

Type -
Description -
Location Contig3096: 94832-95299
Sequence    

Annotation

kegg
ID rcu:RCOM_0417180
description hypothetical protein
nr
ID XP_002534524.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T8F5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0417180 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003096_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001190_060 0.1235062506 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 1 protein [Jatropha curcas]
3 Hb_000056_330 0.1496095784 - - unnamed protein product [Vitis vinifera]
4 Hb_007894_250 0.1581403979 - - hypothetical protein JCGZ_06575 [Jatropha curcas]
5 Hb_000816_120 0.169175363 - - PREDICTED: uncharacterized protein LOC105649214 [Jatropha curcas]
6 Hb_002311_240 0.1900555125 - - hypothetical protein JCGZ_18937 [Jatropha curcas]
7 Hb_000975_150 0.193109352 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH8 isoform X1 [Jatropha curcas]
8 Hb_000926_130 0.1941619427 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
9 Hb_010647_010 0.1987072824 - - PREDICTED: protein NP24-like [Eucalyptus grandis]
10 Hb_000500_110 0.2035643743 - - Blue copper protein precursor, putative [Ricinus communis]
11 Hb_002918_230 0.2070481655 - - PREDICTED: probable glutathione S-transferase [Gossypium raimondii]
12 Hb_007520_040 0.208253534 - - PREDICTED: carbonic anhydrase 2-like [Jatropha curcas]
13 Hb_000213_130 0.215101037 transcription factor TF Family: HSF Heat Stress Transcription Factor family protein [Populus trichocarpa]
14 Hb_006355_030 0.2160809591 transcription factor TF Family: Orphans sensory transduction histidine kinase bacterial, putative [Ricinus communis]
15 Hb_000140_160 0.2163654725 - - PREDICTED: neurofilament light polypeptide-like [Gossypium raimondii]
16 Hb_007072_020 0.2209066886 transcription factor TF Family: bHLH lMYC5 [Hevea brasiliensis]
17 Hb_000011_430 0.221957859 - - zinc finger protein, putative [Ricinus communis]
18 Hb_003992_250 0.2248689653 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2-like [Glycine max]
19 Hb_000445_450 0.2287303311 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
20 Hb_000019_220 0.2315997918 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF113-like [Jatropha curcas]

Gene co-expression network

sample Hb_003096_050 Hb_003096_050 Hb_001190_060 Hb_001190_060 Hb_003096_050--Hb_001190_060 Hb_000056_330 Hb_000056_330 Hb_003096_050--Hb_000056_330 Hb_007894_250 Hb_007894_250 Hb_003096_050--Hb_007894_250 Hb_000816_120 Hb_000816_120 Hb_003096_050--Hb_000816_120 Hb_002311_240 Hb_002311_240 Hb_003096_050--Hb_002311_240 Hb_000975_150 Hb_000975_150 Hb_003096_050--Hb_000975_150 Hb_001190_060--Hb_000816_120 Hb_001190_060--Hb_000056_330 Hb_003992_250 Hb_003992_250 Hb_001190_060--Hb_003992_250 Hb_000140_160 Hb_000140_160 Hb_001190_060--Hb_000140_160 Hb_001190_060--Hb_002311_240 Hb_000926_130 Hb_000926_130 Hb_000056_330--Hb_000926_130 Hb_000056_330--Hb_007894_250 Hb_007072_020 Hb_007072_020 Hb_000056_330--Hb_007072_020 Hb_000056_330--Hb_000975_150 Hb_007894_250--Hb_000926_130 Hb_007894_250--Hb_000975_150 Hb_007894_250--Hb_001190_060 Hb_007894_250--Hb_007072_020 Hb_000758_040 Hb_000758_040 Hb_000816_120--Hb_000758_040 Hb_000816_120--Hb_000056_330 Hb_000213_130 Hb_000213_130 Hb_000816_120--Hb_000213_130 Hb_010647_010 Hb_010647_010 Hb_000816_120--Hb_010647_010 Hb_002311_240--Hb_010647_010 Hb_000019_220 Hb_000019_220 Hb_002311_240--Hb_000019_220 Hb_001250_140 Hb_001250_140 Hb_002311_240--Hb_001250_140 Hb_003057_080 Hb_003057_080 Hb_002311_240--Hb_003057_080 Hb_005000_310 Hb_005000_310 Hb_002311_240--Hb_005000_310 Hb_000347_550 Hb_000347_550 Hb_002311_240--Hb_000347_550 Hb_004800_170 Hb_004800_170 Hb_000975_150--Hb_004800_170 Hb_000390_260 Hb_000390_260 Hb_000975_150--Hb_000390_260 Hb_000975_150--Hb_001190_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.066586 0.098731 0.0783035 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.599815 0.942334 0.196688 8.38148 0

CAGE analysis