Hb_003096_060

Information

Type -
Description -
Location Contig3096: 97558-109269
Sequence    

Annotation

kegg
ID pop:POPTR_0005s07320g
description hypothetical protein
nr
ID XP_012081622.1
description PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
swissprot
ID Q54TM2
description LMBR1 domain-containing protein 2 homolog B OS=Dictyostelium discoideum GN=DDB_G0281669 PE=3 SV=1
trembl
ID A0A067K0V0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18662 PE=4 SV=1
Gene Ontology
ID GO:0016021
description lmbr1 domain-containing protein 2 homolog a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32710: 97588-109194 , PASA_asmbl_32711: 98624-98889 , PASA_asmbl_32713: 102005-107187
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003096_060 0.0 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
2 Hb_008568_020 0.0513160672 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]
3 Hb_154580_010 0.0563162503 - - hypothetical protein PRUPE_ppa002109mg [Prunus persica]
4 Hb_001077_030 0.0595313917 - - PREDICTED: somatic embryogenesis receptor kinase 1 isoform X2 [Jatropha curcas]
5 Hb_000358_230 0.0627926885 - - protein phosphatases pp1 regulatory subunit, putative [Ricinus communis]
6 Hb_000076_160 0.0642052429 - - PREDICTED: AP-5 complex subunit zeta-1 [Jatropha curcas]
7 Hb_001135_120 0.0642870484 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
8 Hb_003038_120 0.0661935966 - - rer1 protein, putative [Ricinus communis]
9 Hb_002325_040 0.0677281771 - - PREDICTED: uncharacterized protein LOC105645422 isoform X1 [Jatropha curcas]
10 Hb_008226_090 0.0691020506 - - PREDICTED: reticulon-like protein B16 isoform X1 [Jatropha curcas]
11 Hb_000525_100 0.0697300292 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
12 Hb_005460_050 0.0711337857 - - COR413-PM2, putative [Ricinus communis]
13 Hb_001751_140 0.0715864067 - - PREDICTED: uncharacterized protein LOC105648510 isoform X1 [Jatropha curcas]
14 Hb_000205_130 0.072614092 - - calcium ion binding protein, putative [Ricinus communis]
15 Hb_007441_020 0.0739550196 - - Rab6 [Hevea brasiliensis]
16 Hb_000576_020 0.0741253444 - - PREDICTED: uncharacterized protein LOC105638286 [Jatropha curcas]
17 Hb_002477_250 0.0747157947 - - DNA-directed RNA polymerase I 49 kDa polypeptide, putative [Ricinus communis]
18 Hb_000645_170 0.076241136 - - conserved hypothetical protein [Ricinus communis]
19 Hb_106552_020 0.0765862482 - - PREDICTED: serine/arginine-rich splicing factor RS2Z33 isoform X1 [Jatropha curcas]
20 Hb_032990_010 0.0778298595 - - PREDICTED: fanconi-associated nuclease 1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_003096_060 Hb_003096_060 Hb_008568_020 Hb_008568_020 Hb_003096_060--Hb_008568_020 Hb_154580_010 Hb_154580_010 Hb_003096_060--Hb_154580_010 Hb_001077_030 Hb_001077_030 Hb_003096_060--Hb_001077_030 Hb_000358_230 Hb_000358_230 Hb_003096_060--Hb_000358_230 Hb_000076_160 Hb_000076_160 Hb_003096_060--Hb_000076_160 Hb_001135_120 Hb_001135_120 Hb_003096_060--Hb_001135_120 Hb_001635_040 Hb_001635_040 Hb_008568_020--Hb_001635_040 Hb_008568_020--Hb_154580_010 Hb_000836_410 Hb_000836_410 Hb_008568_020--Hb_000836_410 Hb_000645_170 Hb_000645_170 Hb_008568_020--Hb_000645_170 Hb_002615_120 Hb_002615_120 Hb_008568_020--Hb_002615_120 Hb_002067_030 Hb_002067_030 Hb_154580_010--Hb_002067_030 Hb_154580_010--Hb_000645_170 Hb_005289_040 Hb_005289_040 Hb_154580_010--Hb_005289_040 Hb_026980_020 Hb_026980_020 Hb_154580_010--Hb_026980_020 Hb_000718_070 Hb_000718_070 Hb_001077_030--Hb_000718_070 Hb_002311_070 Hb_002311_070 Hb_001077_030--Hb_002311_070 Hb_003680_230 Hb_003680_230 Hb_001077_030--Hb_003680_230 Hb_001077_030--Hb_001135_120 Hb_000922_020 Hb_000922_020 Hb_001077_030--Hb_000922_020 Hb_000087_060 Hb_000087_060 Hb_000358_230--Hb_000087_060 Hb_000358_230--Hb_000076_160 Hb_001205_200 Hb_001205_200 Hb_000358_230--Hb_001205_200 Hb_000358_230--Hb_154580_010 Hb_000928_220 Hb_000928_220 Hb_000358_230--Hb_000928_220 Hb_005306_160 Hb_005306_160 Hb_000076_160--Hb_005306_160 Hb_000076_160--Hb_000928_220 Hb_000679_310 Hb_000679_310 Hb_000076_160--Hb_000679_310 Hb_000076_160--Hb_000087_060 Hb_001751_140 Hb_001751_140 Hb_000076_160--Hb_001751_140 Hb_004129_070 Hb_004129_070 Hb_001135_120--Hb_004129_070 Hb_002325_040 Hb_002325_040 Hb_001135_120--Hb_002325_040 Hb_009083_070 Hb_009083_070 Hb_001135_120--Hb_009083_070 Hb_001033_050 Hb_001033_050 Hb_001135_120--Hb_001033_050 Hb_184798_080 Hb_184798_080 Hb_001135_120--Hb_184798_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.4328 18.9189 20.6826 15.5903 16.2842 16.3106
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7098 10.6685 6.42551 11.2947 8.70638

CAGE analysis