Hb_003097_060

Information

Type -
Description -
Location Contig3097: 50469-51801
Sequence    

Annotation

kegg
ID rcu:RCOM_1454040
description hypothetical protein
nr
ID XP_012068585.1
description PREDICTED: GEM-like protein 4 [Jatropha curcas]
swissprot
ID Q9FTA0
description GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g08350 PE=2 SV=1
trembl
ID A0A067L7J7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24479 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32714: 50417-50603 , PASA_asmbl_32715: 50687-51235 , PASA_asmbl_32716: 51312-51830
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003097_060 0.0 - - PREDICTED: GEM-like protein 4 [Jatropha curcas]
2 Hb_011671_460 0.1450872484 - - PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]
3 Hb_012163_020 0.1507818196 - - PREDICTED: uncharacterized protein LOC105650815 isoform X3 [Jatropha curcas]
4 Hb_000096_150 0.1632037806 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
5 Hb_000056_250 0.175728215 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
6 Hb_027751_060 0.1773320129 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Jatropha curcas]
7 Hb_007943_190 0.1802821276 - - cytoplasmic dynein light chain, putative [Ricinus communis]
8 Hb_000340_310 0.1837723417 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
9 Hb_000130_110 0.1857528128 - - PREDICTED: TPR repeat-containing thioredoxin TTL1 [Jatropha curcas]
10 Hb_001059_150 0.1859893198 - - PREDICTED: importin subunit alpha-5 [Jatropha curcas]
11 Hb_000436_030 0.1861166335 - - conserved hypothetical protein [Ricinus communis]
12 Hb_130719_010 0.1879248677 - - V-type proton ATPase subunit E [Hevea brasiliensis]
13 Hb_117807_010 0.1939128488 - - PREDICTED: uncharacterized protein LOC105635720 [Jatropha curcas]
14 Hb_000170_120 0.1953053971 - - ATP binding protein, putative [Ricinus communis]
15 Hb_016564_010 0.1953508096 - - PREDICTED: uncharacterized protein LOC101764501 [Setaria italica]
16 Hb_005496_090 0.1953588649 - - PREDICTED: adenine phosphoribosyltransferase 1-like [Jatropha curcas]
17 Hb_019113_020 0.1966108323 - - hypothetical protein JCGZ_13398 [Jatropha curcas]
18 Hb_011671_450 0.1970569821 - - -
19 Hb_000292_060 0.1974473505 - - transporter, putative [Ricinus communis]
20 Hb_001545_100 0.1981615071 - - PREDICTED: probable F-actin-capping protein subunit beta [Vitis vinifera]

Gene co-expression network

sample Hb_003097_060 Hb_003097_060 Hb_011671_460 Hb_011671_460 Hb_003097_060--Hb_011671_460 Hb_012163_020 Hb_012163_020 Hb_003097_060--Hb_012163_020 Hb_000096_150 Hb_000096_150 Hb_003097_060--Hb_000096_150 Hb_000056_250 Hb_000056_250 Hb_003097_060--Hb_000056_250 Hb_027751_060 Hb_027751_060 Hb_003097_060--Hb_027751_060 Hb_007943_190 Hb_007943_190 Hb_003097_060--Hb_007943_190 Hb_000934_190 Hb_000934_190 Hb_011671_460--Hb_000934_190 Hb_011671_450 Hb_011671_450 Hb_011671_460--Hb_011671_450 Hb_011671_460--Hb_000096_150 Hb_000673_020 Hb_000673_020 Hb_011671_460--Hb_000673_020 Hb_000125_210 Hb_000125_210 Hb_011671_460--Hb_000125_210 Hb_003622_040 Hb_003622_040 Hb_011671_460--Hb_003622_040 Hb_117807_010 Hb_117807_010 Hb_012163_020--Hb_117807_010 Hb_000170_120 Hb_000170_120 Hb_012163_020--Hb_000170_120 Hb_001377_420 Hb_001377_420 Hb_012163_020--Hb_001377_420 Hb_012163_020--Hb_007943_190 Hb_000340_310 Hb_000340_310 Hb_012163_020--Hb_000340_310 Hb_000096_150--Hb_000056_250 Hb_000096_150--Hb_000125_210 Hb_000928_130 Hb_000928_130 Hb_000096_150--Hb_000928_130 Hb_000318_160 Hb_000318_160 Hb_000096_150--Hb_000318_160 Hb_000096_150--Hb_000673_020 Hb_002026_120 Hb_002026_120 Hb_000096_150--Hb_002026_120 Hb_003291_020 Hb_003291_020 Hb_000056_250--Hb_003291_020 Hb_005278_040 Hb_005278_040 Hb_000056_250--Hb_005278_040 Hb_000056_250--Hb_027751_060 Hb_000417_260 Hb_000417_260 Hb_000056_250--Hb_000417_260 Hb_130719_010 Hb_130719_010 Hb_000056_250--Hb_130719_010 Hb_027751_060--Hb_000096_150 Hb_000046_350 Hb_000046_350 Hb_027751_060--Hb_000046_350 Hb_005167_030 Hb_005167_030 Hb_027751_060--Hb_005167_030 Hb_027751_060--Hb_000417_260 Hb_001284_030 Hb_001284_030 Hb_027751_060--Hb_001284_030 Hb_007943_190--Hb_027751_060 Hb_005496_090 Hb_005496_090 Hb_007943_190--Hb_005496_090 Hb_083380_010 Hb_083380_010 Hb_007943_190--Hb_083380_010 Hb_023344_050 Hb_023344_050 Hb_007943_190--Hb_023344_050 Hb_025645_030 Hb_025645_030 Hb_007943_190--Hb_025645_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.9455 0.119668 8.67714 15.3015 6.28571 2.03012
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.7365 21.1474 37.6916 8.32869 14.5642

CAGE analysis