Hb_003097_100

Information

Type -
Description -
Location Contig3097: 70709-73918
Sequence    

Annotation

kegg
ID rcu:RCOM_1454000
description glycerol-3-phosphate dehydrogenase, putative (EC:1.1.1.94)
nr
ID NP_001292964.1
description probable glycerol-3-phosphate dehydrogenase [NAD(+)] 1, cytosolic [Jatropha curcas]
swissprot
ID Q8S2G5
description Probable glycerol-3-phosphate dehydrogenase [NAD(+)] 2, cytosolic OS=Oryza sativa subsp. japonica GN=Os01g0801600 PE=2 SV=1
trembl
ID H6TBK4
description Glycerol-3-phosphate dehydrogenase [NAD(+)] OS=Jatropha curcas GN=GPDH PE=2 SV=1
Gene Ontology
ID GO:0009331
description probable glycerol-3-phosphate dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32722: 70660-73589 , PASA_asmbl_32723: 73751-74065 , PASA_asmbl_32724: 74563-74879
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003097_100 0.0 - - probable glycerol-3-phosphate dehydrogenase [NAD(+)] 1, cytosolic [Jatropha curcas]
2 Hb_000069_230 0.0855002878 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH13-like [Jatropha curcas]
3 Hb_000634_070 0.101944546 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
4 Hb_003078_050 0.1173616001 - - PREDICTED: serine/threonine-protein kinase OXI1 [Jatropha curcas]
5 Hb_028207_040 0.1259461625 - - PREDICTED: beta-hexosaminidase 2 [Jatropha curcas]
6 Hb_022693_050 0.1278026548 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
7 Hb_003728_040 0.1321051385 - - PREDICTED: uncharacterized protein LOC101492305 [Cicer arietinum]
8 Hb_003055_140 0.1325035971 transcription factor TF Family: SNF2 PREDICTED: uncharacterized protein LOC105649495 [Jatropha curcas]
9 Hb_004597_010 0.1325910278 transcription factor TF Family: bHLH PREDICTED: transcription factor MYC2 [Jatropha curcas]
10 Hb_001766_020 0.1345952155 - - PREDICTED: probable galacturonosyltransferase 14 [Populus euphratica]
11 Hb_003752_100 0.1360404595 - - PREDICTED: FRIGIDA-like protein 3 [Jatropha curcas]
12 Hb_001268_390 0.1366967211 - - PREDICTED: uncharacterized protein LOC105108367 isoform X1 [Populus euphratica]
13 Hb_000953_050 0.1408529645 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
14 Hb_001525_010 0.1425363908 - - PREDICTED: uncharacterized protein LOC105638298 [Jatropha curcas]
15 Hb_000905_210 0.1430373519 - - PREDICTED: protein gar2 [Jatropha curcas]
16 Hb_010921_030 0.1448301306 transcription factor TF Family: PHD PREDICTED: PHD finger protein At2g01810 [Jatropha curcas]
17 Hb_000084_030 0.1467108698 - - conserved hypothetical protein [Ricinus communis]
18 Hb_116086_010 0.1470210711 - - hypothetical protein JCGZ_14829 [Jatropha curcas]
19 Hb_000442_010 0.1471048667 - - hypothetical protein POPTR_0010s19060g [Populus trichocarpa]
20 Hb_001477_070 0.1485874138 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003097_100 Hb_003097_100 Hb_000069_230 Hb_000069_230 Hb_003097_100--Hb_000069_230 Hb_000634_070 Hb_000634_070 Hb_003097_100--Hb_000634_070 Hb_003078_050 Hb_003078_050 Hb_003097_100--Hb_003078_050 Hb_028207_040 Hb_028207_040 Hb_003097_100--Hb_028207_040 Hb_022693_050 Hb_022693_050 Hb_003097_100--Hb_022693_050 Hb_003728_040 Hb_003728_040 Hb_003097_100--Hb_003728_040 Hb_000069_230--Hb_003078_050 Hb_000069_230--Hb_028207_040 Hb_000069_230--Hb_000634_070 Hb_004597_010 Hb_004597_010 Hb_000069_230--Hb_004597_010 Hb_001525_010 Hb_001525_010 Hb_000069_230--Hb_001525_010 Hb_000634_070--Hb_003078_050 Hb_000953_050 Hb_000953_050 Hb_000634_070--Hb_000953_050 Hb_001205_030 Hb_001205_030 Hb_000634_070--Hb_001205_030 Hb_000634_070--Hb_028207_040 Hb_003078_050--Hb_028207_040 Hb_000258_380 Hb_000258_380 Hb_003078_050--Hb_000258_380 Hb_003078_050--Hb_001205_030 Hb_028207_040--Hb_000953_050 Hb_028207_040--Hb_001525_010 Hb_003120_050 Hb_003120_050 Hb_028207_040--Hb_003120_050 Hb_001369_570 Hb_001369_570 Hb_028207_040--Hb_001369_570 Hb_002835_250 Hb_002835_250 Hb_022693_050--Hb_002835_250 Hb_010921_030 Hb_010921_030 Hb_022693_050--Hb_010921_030 Hb_022693_050--Hb_000069_230 Hb_022693_050--Hb_003078_050 Hb_022693_050--Hb_003120_050 Hb_003055_140 Hb_003055_140 Hb_003728_040--Hb_003055_140 Hb_001766_020 Hb_001766_020 Hb_003728_040--Hb_001766_020 Hb_000442_010 Hb_000442_010 Hb_003728_040--Hb_000442_010 Hb_004440_040 Hb_004440_040 Hb_003728_040--Hb_004440_040 Hb_001104_170 Hb_001104_170 Hb_003728_040--Hb_001104_170 Hb_000347_120 Hb_000347_120 Hb_003728_040--Hb_000347_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.9713 69.0837 21.3907 11.5754 13.6224 15.5293
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.7768 18.032 27.7455 6.76928 7.89346

CAGE analysis