Hb_003097_120

Information

Type -
Description -
Location Contig3097: 75686-78079
Sequence    

Annotation

kegg
ID rcu:RCOM_1453990
description Cytokinin dehydrogenase, putative (EC:1.5.99.12)
nr
ID XP_012068593.1
description PREDICTED: cytokinin dehydrogenase 6 [Jatropha curcas]
swissprot
ID Q9LY71
description Cytokinin dehydrogenase 6 OS=Arabidopsis thaliana GN=CKX6 PE=2 SV=2
trembl
ID B9RGG6
description Cytokinin dehydrogenase, putative OS=Ricinus communis GN=RCOM_1453990 PE=4 SV=1
Gene Ontology
ID GO:0008762
description cytokinin dehydrogenase 6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32726: 75891-76548 , PASA_asmbl_32727: 76691-77394 , PASA_asmbl_32728: 77428-77594 , PASA_asmbl_32729: 77663-77857 , PASA_asmbl_32730: 78625-78862
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003097_120 0.0 - - PREDICTED: cytokinin dehydrogenase 6 [Jatropha curcas]
2 Hb_000991_040 0.1075570077 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Gossypium raimondii]
3 Hb_003181_040 0.137853266 - - PREDICTED: uncharacterized protein LOC105647655 isoform X1 [Jatropha curcas]
4 Hb_001856_220 0.1389492743 - - conserved hypothetical protein [Ricinus communis]
5 Hb_102291_010 0.1400630898 - - PREDICTED: histone chaperone ASF1B [Populus euphratica]
6 Hb_021443_090 0.1444101479 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Jatropha curcas]
7 Hb_001357_040 0.1453518823 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
8 Hb_000260_600 0.148265843 - - conserved hypothetical protein [Ricinus communis]
9 Hb_010534_010 0.1541202734 - - PREDICTED: ER lumen protein-retaining receptor [Jatropha curcas]
10 Hb_005276_060 0.1545340658 - - PREDICTED: cyclin-P3-1 isoform X2 [Jatropha curcas]
11 Hb_000931_020 0.1574257908 - - PREDICTED: uncharacterized protein LOC105649774 isoform X1 [Jatropha curcas]
12 Hb_008937_010 0.1600115962 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80A2 isoform X2 [Jatropha curcas]
13 Hb_004725_050 0.161679887 - - Rhomboid protein, putative [Ricinus communis]
14 Hb_000245_080 0.1625063986 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-15 [Jatropha curcas]
15 Hb_000815_240 0.1636219937 - - PREDICTED: galactoside 2-alpha-L-fucosyltransferase-like isoform X1 [Jatropha curcas]
16 Hb_005015_080 0.1640496364 - - PREDICTED: shikimate kinase 1, chloroplastic [Jatropha curcas]
17 Hb_000009_400 0.1645210252 - - PREDICTED: BTB/POZ domain-containing protein At3g50780 [Jatropha curcas]
18 Hb_001016_050 0.1647011558 - - drought-inducible protein [Manihot esculenta]
19 Hb_000622_340 0.1654295124 - - PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 [Jatropha curcas]
20 Hb_000322_070 0.1656342969 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_003097_120 Hb_003097_120 Hb_000991_040 Hb_000991_040 Hb_003097_120--Hb_000991_040 Hb_003181_040 Hb_003181_040 Hb_003097_120--Hb_003181_040 Hb_001856_220 Hb_001856_220 Hb_003097_120--Hb_001856_220 Hb_102291_010 Hb_102291_010 Hb_003097_120--Hb_102291_010 Hb_021443_090 Hb_021443_090 Hb_003097_120--Hb_021443_090 Hb_001357_040 Hb_001357_040 Hb_003097_120--Hb_001357_040 Hb_000622_340 Hb_000622_340 Hb_000991_040--Hb_000622_340 Hb_000260_600 Hb_000260_600 Hb_000991_040--Hb_000260_600 Hb_000815_240 Hb_000815_240 Hb_000991_040--Hb_000815_240 Hb_008937_010 Hb_008937_010 Hb_000991_040--Hb_008937_010 Hb_000390_250 Hb_000390_250 Hb_000991_040--Hb_000390_250 Hb_000322_070 Hb_000322_070 Hb_000991_040--Hb_000322_070 Hb_003181_040--Hb_001856_220 Hb_003181_040--Hb_008937_010 Hb_000115_340 Hb_000115_340 Hb_003181_040--Hb_000115_340 Hb_001258_020 Hb_001258_020 Hb_003181_040--Hb_001258_020 Hb_003398_080 Hb_003398_080 Hb_003181_040--Hb_003398_080 Hb_004553_030 Hb_004553_030 Hb_003181_040--Hb_004553_030 Hb_001856_220--Hb_008937_010 Hb_003918_030 Hb_003918_030 Hb_001856_220--Hb_003918_030 Hb_010407_060 Hb_010407_060 Hb_001856_220--Hb_010407_060 Hb_001545_150 Hb_001545_150 Hb_001856_220--Hb_001545_150 Hb_002071_050 Hb_002071_050 Hb_001856_220--Hb_002071_050 Hb_002235_210 Hb_002235_210 Hb_102291_010--Hb_002235_210 Hb_005306_160 Hb_005306_160 Hb_102291_010--Hb_005306_160 Hb_003746_030 Hb_003746_030 Hb_102291_010--Hb_003746_030 Hb_014361_150 Hb_014361_150 Hb_102291_010--Hb_014361_150 Hb_003371_150 Hb_003371_150 Hb_102291_010--Hb_003371_150 Hb_000309_040 Hb_000309_040 Hb_102291_010--Hb_000309_040 Hb_001146_020 Hb_001146_020 Hb_021443_090--Hb_001146_020 Hb_005015_080 Hb_005015_080 Hb_021443_090--Hb_005015_080 Hb_021443_090--Hb_000815_240 Hb_000418_010 Hb_000418_010 Hb_021443_090--Hb_000418_010 Hb_021443_090--Hb_000991_040 Hb_006198_020 Hb_006198_020 Hb_021443_090--Hb_006198_020 Hb_003617_020 Hb_003617_020 Hb_001357_040--Hb_003617_020 Hb_004725_050 Hb_004725_050 Hb_001357_040--Hb_004725_050 Hb_001377_270 Hb_001377_270 Hb_001357_040--Hb_001377_270 Hb_001674_030 Hb_001674_030 Hb_001357_040--Hb_001674_030 Hb_000080_150 Hb_000080_150 Hb_001357_040--Hb_000080_150 Hb_000931_020 Hb_000931_020 Hb_001357_040--Hb_000931_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.56772 2.60501 1.1679 3.29871 1.84405 0.814538
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.849503 0.935698 1.17564 0.328664 0.65473

CAGE analysis