Hb_003097_140

Information

Type -
Description -
Location Contig3097: 94632-104725
Sequence    

Annotation

kegg
ID pop:POPTR_0001s06000g
description POPTRDRAFT_708538; elongation defective 1 family protein
nr
ID XP_012068598.1
description PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
swissprot
ID Q9C9Z9
description Glycosyltransferase-like KOBITO 1 OS=Arabidopsis thaliana GN=ELD1 PE=1 SV=1
trembl
ID A0A067L7K6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24489 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32731: 94774-104683 , PASA_asmbl_32732: 96210-96654 , PASA_asmbl_32733: 100194-100313
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003097_140 0.0 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
2 Hb_003994_220 0.0677481082 - - PREDICTED: V-type proton ATPase catalytic subunit A [Jatropha curcas]
3 Hb_001440_020 0.06822887 - - exocyst componenet sec8, putative [Ricinus communis]
4 Hb_007765_040 0.0703136707 - - Cytosolic enolase isoform 3 [Theobroma cacao]
5 Hb_000477_100 0.0712511097 - - PREDICTED: GDP-mannose transporter GONST4 [Jatropha curcas]
6 Hb_000390_050 0.0723584711 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
7 Hb_027445_020 0.0731295778 - - PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein [Jatropha curcas]
8 Hb_002902_130 0.0738726817 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
9 Hb_001369_360 0.0740790145 - - embryo yellow protein, partial [Manihot esculenta]
10 Hb_001703_050 0.0751258684 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
11 Hb_007416_210 0.0753652218 - - PREDICTED: coatomer subunit beta-1 [Jatropha curcas]
12 Hb_000237_050 0.0762539411 - - CP2 [Hevea brasiliensis]
13 Hb_103684_010 0.0772970254 - - PREDICTED: cullin-1 isoform X3 [Nicotiana tomentosiformis]
14 Hb_012114_100 0.0790448625 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
15 Hb_009569_040 0.0791959059 - - PREDICTED: uncharacterized protein LOC105635573 [Jatropha curcas]
16 Hb_003998_040 0.0804855543 - - organic anion transporter, putative [Ricinus communis]
17 Hb_003038_040 0.0829495723 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
18 Hb_001821_150 0.0836696615 - - PREDICTED: potassium transporter 7-like [Jatropha curcas]
19 Hb_001051_070 0.0872734013 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X2 [Jatropha curcas]
20 Hb_000352_300 0.0888504193 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Jatropha curcas]

Gene co-expression network

sample Hb_003097_140 Hb_003097_140 Hb_003994_220 Hb_003994_220 Hb_003097_140--Hb_003994_220 Hb_001440_020 Hb_001440_020 Hb_003097_140--Hb_001440_020 Hb_007765_040 Hb_007765_040 Hb_003097_140--Hb_007765_040 Hb_000477_100 Hb_000477_100 Hb_003097_140--Hb_000477_100 Hb_000390_050 Hb_000390_050 Hb_003097_140--Hb_000390_050 Hb_027445_020 Hb_027445_020 Hb_003097_140--Hb_027445_020 Hb_003038_040 Hb_003038_040 Hb_003994_220--Hb_003038_040 Hb_001703_050 Hb_001703_050 Hb_003994_220--Hb_001703_050 Hb_031527_080 Hb_031527_080 Hb_003994_220--Hb_031527_080 Hb_007416_210 Hb_007416_210 Hb_003994_220--Hb_007416_210 Hb_001021_010 Hb_001021_010 Hb_003994_220--Hb_001021_010 Hb_012518_070 Hb_012518_070 Hb_001440_020--Hb_012518_070 Hb_012114_100 Hb_012114_100 Hb_001440_020--Hb_012114_100 Hb_008511_020 Hb_008511_020 Hb_001440_020--Hb_008511_020 Hb_002675_030 Hb_002675_030 Hb_001440_020--Hb_002675_030 Hb_001329_250 Hb_001329_250 Hb_001440_020--Hb_001329_250 Hb_007765_040--Hb_000390_050 Hb_003998_040 Hb_003998_040 Hb_007765_040--Hb_003998_040 Hb_005218_020 Hb_005218_020 Hb_007765_040--Hb_005218_020 Hb_000066_030 Hb_000066_030 Hb_007765_040--Hb_000066_030 Hb_007765_040--Hb_007416_210 Hb_007481_010 Hb_007481_010 Hb_000477_100--Hb_007481_010 Hb_000046_500 Hb_000046_500 Hb_000477_100--Hb_000046_500 Hb_000352_300 Hb_000352_300 Hb_000477_100--Hb_000352_300 Hb_000146_040 Hb_000146_040 Hb_000477_100--Hb_000146_040 Hb_001051_070 Hb_001051_070 Hb_000477_100--Hb_001051_070 Hb_000417_390 Hb_000417_390 Hb_000390_050--Hb_000417_390 Hb_000390_050--Hb_007416_210 Hb_002928_090 Hb_002928_090 Hb_000390_050--Hb_002928_090 Hb_002902_130 Hb_002902_130 Hb_000390_050--Hb_002902_130 Hb_001369_360 Hb_001369_360 Hb_027445_020--Hb_001369_360 Hb_000237_040 Hb_000237_040 Hb_027445_020--Hb_000237_040 Hb_000976_100 Hb_000976_100 Hb_027445_020--Hb_000976_100 Hb_002874_110 Hb_002874_110 Hb_027445_020--Hb_002874_110 Hb_000237_050 Hb_000237_050 Hb_027445_020--Hb_000237_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.73853 8.99302 9.27757 25.1493 9.02117 10.0462
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.49817 7.08079 10.2537 14.97 14.7589

CAGE analysis