Hb_003097_150

Information

Type -
Description -
Location Contig3097: 105840-112408
Sequence    

Annotation

kegg
ID pop:POPTR_0003s20160g
description POPTRDRAFT_817608; hypothetical protein
nr
ID XP_012068599.1
description PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Jatropha curcas]
swissprot
ID Q9FPS3
description Ubiquitin carboxyl-terminal hydrolase 24 OS=Arabidopsis thaliana GN=UBP24 PE=1 SV=1
trembl
ID A0A067KWA3
description Ubiquitin carboxyl-terminal hydrolase OS=Jatropha curcas GN=JCGZ_24490 PE=3 SV=1
Gene Ontology
ID GO:0008234
description ubiquitin carboxyl-terminal hydrolase 24 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32734: 105956-106169 , PASA_asmbl_32735: 106787-107409 , PASA_asmbl_32736: 106170-107409 , PASA_asmbl_32738: 111841-111990 , PASA_asmbl_32739: 111254-112518 , PASA_asmbl_32740: 111453-111610
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003097_150 0.0 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Jatropha curcas]
2 Hb_000300_060 0.0596836641 - - PREDICTED: F-box protein SKIP24 [Jatropha curcas]
3 Hb_004600_040 0.0667496952 - - -
4 Hb_005237_010 0.0750562133 - - PREDICTED: uncharacterized protein LOC105630921 [Jatropha curcas]
5 Hb_002609_110 0.0763186462 - - hypothetical protein JCGZ_08497 [Jatropha curcas]
6 Hb_002149_020 0.0791557331 - - PREDICTED: uncharacterized protein LOC105647982 isoform X2 [Jatropha curcas]
7 Hb_001571_040 0.0813467598 - - PREDICTED: uncharacterized protein LOC105643972 [Jatropha curcas]
8 Hb_000815_210 0.0814436162 - - uncoupling protein 3, partial [Manihot esculenta]
9 Hb_000019_230 0.0821742435 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
10 Hb_000123_260 0.0826490095 - - PREDICTED: protein gar2 [Jatropha curcas]
11 Hb_004195_160 0.0836014952 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
12 Hb_066182_010 0.084227043 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
13 Hb_007426_230 0.0845568108 - - hypothetical protein CICLE_v10017932mg [Citrus clementina]
14 Hb_003777_330 0.0846455053 - - ribonucleoside-diphosphate reductase large chain, putative [Ricinus communis]
15 Hb_001157_060 0.0864499084 - - PREDICTED: putative nitric oxide synthase [Jatropha curcas]
16 Hb_000923_020 0.0872246535 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
17 Hb_002007_250 0.088409053 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005928_060 0.0886492871 - - DNA-directed RNA polymerase III 25 kD polypeptide, putative [Ricinus communis]
19 Hb_000640_230 0.0888952698 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005276_210 0.0895830444 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_003097_150 Hb_003097_150 Hb_000300_060 Hb_000300_060 Hb_003097_150--Hb_000300_060 Hb_004600_040 Hb_004600_040 Hb_003097_150--Hb_004600_040 Hb_005237_010 Hb_005237_010 Hb_003097_150--Hb_005237_010 Hb_002609_110 Hb_002609_110 Hb_003097_150--Hb_002609_110 Hb_002149_020 Hb_002149_020 Hb_003097_150--Hb_002149_020 Hb_001571_040 Hb_001571_040 Hb_003097_150--Hb_001571_040 Hb_066182_010 Hb_066182_010 Hb_000300_060--Hb_066182_010 Hb_005276_210 Hb_005276_210 Hb_000300_060--Hb_005276_210 Hb_000300_060--Hb_001571_040 Hb_002081_130 Hb_002081_130 Hb_000300_060--Hb_002081_130 Hb_003010_030 Hb_003010_030 Hb_000300_060--Hb_003010_030 Hb_002876_110 Hb_002876_110 Hb_004600_040--Hb_002876_110 Hb_000538_200 Hb_000538_200 Hb_004600_040--Hb_000538_200 Hb_000123_260 Hb_000123_260 Hb_004600_040--Hb_000123_260 Hb_000421_260 Hb_000421_260 Hb_004600_040--Hb_000421_260 Hb_000317_020 Hb_000317_020 Hb_004600_040--Hb_000317_020 Hb_005237_010--Hb_004600_040 Hb_005928_060 Hb_005928_060 Hb_005237_010--Hb_005928_060 Hb_012654_010 Hb_012654_010 Hb_005237_010--Hb_012654_010 Hb_000815_210 Hb_000815_210 Hb_005237_010--Hb_000815_210 Hb_002007_250 Hb_002007_250 Hb_005237_010--Hb_002007_250 Hb_000057_040 Hb_000057_040 Hb_002609_110--Hb_000057_040 Hb_001252_080 Hb_001252_080 Hb_002609_110--Hb_001252_080 Hb_002609_110--Hb_002149_020 Hb_004195_160 Hb_004195_160 Hb_002609_110--Hb_004195_160 Hb_182026_020 Hb_182026_020 Hb_002609_110--Hb_182026_020 Hb_000418_100 Hb_000418_100 Hb_002609_110--Hb_000418_100 Hb_002149_020--Hb_066182_010 Hb_004440_090 Hb_004440_090 Hb_002149_020--Hb_004440_090 Hb_002391_300 Hb_002391_300 Hb_002149_020--Hb_002391_300 Hb_002149_020--Hb_000300_060 Hb_003005_020 Hb_003005_020 Hb_002149_020--Hb_003005_020 Hb_001790_020 Hb_001790_020 Hb_001571_040--Hb_001790_020 Hb_000032_570 Hb_000032_570 Hb_001571_040--Hb_000032_570 Hb_006332_020 Hb_006332_020 Hb_001571_040--Hb_006332_020 Hb_001571_040--Hb_066182_010 Hb_012634_010 Hb_012634_010 Hb_001571_040--Hb_012634_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.5073 9.20629 4.78775 6.70891 27.8595 23.5118
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.4821 23.3137 13.7804 10.4746 6.68634

CAGE analysis