Hb_003097_160

Information

Type -
Description -
Location Contig3097: 114371-115627
Sequence    

Annotation

kegg
ID pop:POPTR_0001s06020g
description POPTRDRAFT_841786; hypothetical protein
nr
ID XP_012068600.1
description PREDICTED: F-box/WD repeat-containing protein sel-10 [Jatropha curcas]
swissprot
ID Q09990
description F-box/WD repeat-containing protein lin-23 OS=Caenorhabditis elegans GN=lin-23 PE=1 SV=2
trembl
ID A0A067KWF4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24491 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003097_160 0.0 - - PREDICTED: F-box/WD repeat-containing protein sel-10 [Jatropha curcas]
2 Hb_001951_080 0.1011682359 - - O-acetyltransferase, putative [Ricinus communis]
3 Hb_012484_050 0.1121425736 - - PREDICTED: kinesin KP1 [Jatropha curcas]
4 Hb_000417_210 0.1131327024 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_005784_010 0.1143258519 - - PREDICTED: uncharacterized protein LOC105645175 [Jatropha curcas]
6 Hb_006788_110 0.1216194065 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
7 Hb_000910_060 0.1220978136 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
8 Hb_000103_070 0.1228738345 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
9 Hb_000903_040 0.1247396284 - - PREDICTED: pirin-like protein [Jatropha curcas]
10 Hb_012055_070 0.1249187968 - - calcium ion binding protein, putative [Ricinus communis]
11 Hb_009252_070 0.1254560286 - - hypothetical protein JCGZ_11488 [Jatropha curcas]
12 Hb_006002_050 0.1258127304 - - PREDICTED: uncharacterized protein LOC105638083 [Jatropha curcas]
13 Hb_003177_040 0.1297215982 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
14 Hb_001159_230 0.1305310313 - - Kinesin heavy chain, putative [Ricinus communis]
15 Hb_005295_020 0.1309558627 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
16 Hb_000997_080 0.1315383608 - - PREDICTED: protein WVD2-like 1 isoform X1 [Jatropha curcas]
17 Hb_000820_110 0.1323249892 - - UDP-XYL synthase 6 isoform 1 [Theobroma cacao]
18 Hb_000345_550 0.1328336584 - - PREDICTED: uncharacterized protein LOC105629456 [Jatropha curcas]
19 Hb_000676_230 0.1328917159 - - PREDICTED: beta-galactosidase 3 [Jatropha curcas]
20 Hb_000003_280 0.1334733084 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003097_160 Hb_003097_160 Hb_001951_080 Hb_001951_080 Hb_003097_160--Hb_001951_080 Hb_012484_050 Hb_012484_050 Hb_003097_160--Hb_012484_050 Hb_000417_210 Hb_000417_210 Hb_003097_160--Hb_000417_210 Hb_005784_010 Hb_005784_010 Hb_003097_160--Hb_005784_010 Hb_006788_110 Hb_006788_110 Hb_003097_160--Hb_006788_110 Hb_000910_060 Hb_000910_060 Hb_003097_160--Hb_000910_060 Hb_001951_080--Hb_012484_050 Hb_001951_080--Hb_005784_010 Hb_000345_550 Hb_000345_550 Hb_001951_080--Hb_000345_550 Hb_001486_280 Hb_001486_280 Hb_001951_080--Hb_001486_280 Hb_003125_210 Hb_003125_210 Hb_001951_080--Hb_003125_210 Hb_007163_100 Hb_007163_100 Hb_012484_050--Hb_007163_100 Hb_012098_160 Hb_012098_160 Hb_012484_050--Hb_012098_160 Hb_001512_130 Hb_001512_130 Hb_012484_050--Hb_001512_130 Hb_000012_330 Hb_000012_330 Hb_012484_050--Hb_000012_330 Hb_012484_050--Hb_001486_280 Hb_000364_090 Hb_000364_090 Hb_000417_210--Hb_000364_090 Hb_000903_040 Hb_000903_040 Hb_000417_210--Hb_000903_040 Hb_138585_010 Hb_138585_010 Hb_000417_210--Hb_138585_010 Hb_000676_230 Hb_000676_230 Hb_000417_210--Hb_000676_230 Hb_004804_010 Hb_004804_010 Hb_000417_210--Hb_004804_010 Hb_000417_210--Hb_012484_050 Hb_005784_010--Hb_000345_550 Hb_007904_280 Hb_007904_280 Hb_005784_010--Hb_007904_280 Hb_004223_060 Hb_004223_060 Hb_005784_010--Hb_004223_060 Hb_001819_020 Hb_001819_020 Hb_005784_010--Hb_001819_020 Hb_009783_010 Hb_009783_010 Hb_005784_010--Hb_009783_010 Hb_033312_070 Hb_033312_070 Hb_006788_110--Hb_033312_070 Hb_003376_140 Hb_003376_140 Hb_006788_110--Hb_003376_140 Hb_000735_020 Hb_000735_020 Hb_006788_110--Hb_000735_020 Hb_004531_160 Hb_004531_160 Hb_006788_110--Hb_004531_160 Hb_000984_130 Hb_000984_130 Hb_006788_110--Hb_000984_130 Hb_011918_070 Hb_011918_070 Hb_006788_110--Hb_011918_070 Hb_009252_070 Hb_009252_070 Hb_000910_060--Hb_009252_070 Hb_001269_660 Hb_001269_660 Hb_000910_060--Hb_001269_660 Hb_012395_060 Hb_012395_060 Hb_000910_060--Hb_012395_060 Hb_000103_440 Hb_000103_440 Hb_000910_060--Hb_000103_440 Hb_136408_040 Hb_136408_040 Hb_000910_060--Hb_136408_040 Hb_005295_020 Hb_005295_020 Hb_000910_060--Hb_005295_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.134267 0.220878 1.45613 4.30877 0.079879 0.0523531
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0603963 0 0.350521 2.38085

CAGE analysis