Hb_003097_180

Information

Type -
Description -
Location Contig3097: 118991-140103
Sequence    

Annotation

kegg
ID rcu:RCOM_1453710
description endonuclease, putative
nr
ID XP_012068605.1
description PREDICTED: crossover junction endonuclease MUS81 [Jatropha curcas]
swissprot
ID Q5W9E7
description Crossover junction endonuclease MUS81 OS=Arabidopsis thaliana GN=MUS81 PE=1 SV=1
trembl
ID A0A067L8Q4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24493 PE=4 SV=1
Gene Ontology
ID GO:0003677
description crossover junction endonuclease mus81 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32742: 117840-137569 , PASA_asmbl_32745: 129044-136246
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003097_180 0.0 - - PREDICTED: crossover junction endonuclease MUS81 [Jatropha curcas]
2 Hb_000120_620 0.0589180194 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1a isoform X1 [Jatropha curcas]
3 Hb_000098_130 0.0593126295 - - PREDICTED: serine/threonine-protein kinase SRK2A [Jatropha curcas]
4 Hb_000261_290 0.0684034194 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
5 Hb_004899_070 0.0741647717 - - PREDICTED: RRP12-like protein [Jatropha curcas]
6 Hb_006588_050 0.0788478157 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
7 Hb_001178_150 0.0878467519 - - PREDICTED: uncharacterized protein LOC105635484 [Jatropha curcas]
8 Hb_000158_130 0.0911415711 - - PREDICTED: uncharacterized protein LOC105647950 isoform X1 [Jatropha curcas]
9 Hb_008725_130 0.0926404439 - - PREDICTED: importin subunit alpha-like [Jatropha curcas]
10 Hb_003124_130 0.0942669475 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
11 Hb_003866_020 0.0958518079 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004970_160 0.096398914 - - PREDICTED: THO complex subunit 5B-like isoform X2 [Jatropha curcas]
13 Hb_002066_080 0.0966988596 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
14 Hb_005462_020 0.0971905058 - - PREDICTED: UBP1-associated protein 2A-like [Jatropha curcas]
15 Hb_003529_130 0.0975054911 - - PREDICTED: ribosome biogenesis protein BOP1 homolog isoform X1 [Jatropha curcas]
16 Hb_000313_340 0.0984922256 - - DNA repair protein xp-E, putative [Ricinus communis]
17 Hb_000300_360 0.0997297187 - - PREDICTED: exosome component 10 [Jatropha curcas]
18 Hb_147737_010 0.1011174714 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
19 Hb_140049_020 0.1016942395 - - PREDICTED: cell division cycle protein 73 [Jatropha curcas]
20 Hb_001028_070 0.1025715637 - - PREDICTED: WD repeat-containing protein 75 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_003097_180 Hb_003097_180 Hb_000120_620 Hb_000120_620 Hb_003097_180--Hb_000120_620 Hb_000098_130 Hb_000098_130 Hb_003097_180--Hb_000098_130 Hb_000261_290 Hb_000261_290 Hb_003097_180--Hb_000261_290 Hb_004899_070 Hb_004899_070 Hb_003097_180--Hb_004899_070 Hb_006588_050 Hb_006588_050 Hb_003097_180--Hb_006588_050 Hb_001178_150 Hb_001178_150 Hb_003097_180--Hb_001178_150 Hb_000120_620--Hb_004899_070 Hb_004970_160 Hb_004970_160 Hb_000120_620--Hb_004970_160 Hb_000120_620--Hb_000098_130 Hb_000120_620--Hb_000261_290 Hb_000120_620--Hb_001178_150 Hb_000098_130--Hb_000261_290 Hb_000098_130--Hb_004899_070 Hb_000363_130 Hb_000363_130 Hb_000098_130--Hb_000363_130 Hb_000300_360 Hb_000300_360 Hb_000098_130--Hb_000300_360 Hb_000261_290--Hb_004899_070 Hb_000313_340 Hb_000313_340 Hb_000261_290--Hb_000313_340 Hb_000261_290--Hb_006588_050 Hb_004899_070--Hb_004970_160 Hb_000640_200 Hb_000640_200 Hb_004899_070--Hb_000640_200 Hb_000813_100 Hb_000813_100 Hb_004899_070--Hb_000813_100 Hb_006588_050--Hb_004899_070 Hb_003866_020 Hb_003866_020 Hb_006588_050--Hb_003866_020 Hb_006816_300 Hb_006816_300 Hb_006588_050--Hb_006816_300 Hb_006588_050--Hb_000120_620 Hb_000935_090 Hb_000935_090 Hb_001178_150--Hb_000935_090 Hb_000347_570 Hb_000347_570 Hb_001178_150--Hb_000347_570 Hb_000796_190 Hb_000796_190 Hb_001178_150--Hb_000796_190 Hb_001473_090 Hb_001473_090 Hb_001178_150--Hb_001473_090 Hb_009151_020 Hb_009151_020 Hb_001178_150--Hb_009151_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.26327 4.36029 2.69527 1.45542 4.68349 6.9378
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.5251 0.983351 1.20282 2.46538 1.09371

CAGE analysis