Hb_003097_190

Information

Type transcription factor
Description TF Family: GRAS
Location Contig3097: 142048-145533
Sequence    

Annotation

kegg
ID rcu:RCOM_1453680
description transcription factor, putative
nr
ID XP_012068606.1
description PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
swissprot
ID Q9LPR8
description Scarecrow-like protein 3 OS=Arabidopsis thaliana GN=SCL3 PE=2 SV=1
trembl
ID A0A067KWA8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24495 PE=4 SV=1
Gene Ontology
ID GO:0005634
description scarecrow-like protein 3 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32746: 144547-144709
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003097_190 0.0 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
2 Hb_010068_030 0.0829641097 - - aconitase, putative [Ricinus communis]
3 Hb_012654_010 0.0859178377 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
4 Hb_000152_560 0.0873079401 - - hypothetical protein JCGZ_26236 [Jatropha curcas]
5 Hb_001057_010 0.0911926047 - - cation-transporting atpase plant, putative [Ricinus communis]
6 Hb_002890_030 0.0922097268 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
7 Hb_000861_070 0.0971006455 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000270_140 0.1052913657 - - PREDICTED: uncharacterized protein LOC105640478 isoform X1 [Jatropha curcas]
9 Hb_000139_250 0.1058963739 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
10 Hb_005214_160 0.1082727201 - - PREDICTED: heat shock 70 kDa protein, mitochondrial [Jatropha curcas]
11 Hb_000422_140 0.1121881565 - - PREDICTED: apoptosis-inducing factor 2-like isoform X1 [Jatropha curcas]
12 Hb_012132_030 0.1143395851 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
13 Hb_002499_070 0.1147803721 - - PREDICTED: uncharacterized protein LOC105628378 isoform X2 [Jatropha curcas]
14 Hb_002701_080 0.1156569215 - - PREDICTED: E3 ubiquitin-protein ligase At3g02290-like [Jatropha curcas]
15 Hb_001427_170 0.1171072978 - - PREDICTED: 40S ribosomal protein S15a-5-like [Populus euphratica]
16 Hb_011612_010 0.117305034 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
17 Hb_000946_120 0.1177323438 - - DNA binding protein, putative [Ricinus communis]
18 Hb_004678_020 0.1178859286 - - PREDICTED: protein YIF1B [Jatropha curcas]
19 Hb_011344_010 0.1180556215 - - PREDICTED: NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 [Jatropha curcas]
20 Hb_004656_060 0.1181639331 - - PREDICTED: uncharacterized protein LOC105634581 [Jatropha curcas]

Gene co-expression network

sample Hb_003097_190 Hb_003097_190 Hb_010068_030 Hb_010068_030 Hb_003097_190--Hb_010068_030 Hb_012654_010 Hb_012654_010 Hb_003097_190--Hb_012654_010 Hb_000152_560 Hb_000152_560 Hb_003097_190--Hb_000152_560 Hb_001057_010 Hb_001057_010 Hb_003097_190--Hb_001057_010 Hb_002890_030 Hb_002890_030 Hb_003097_190--Hb_002890_030 Hb_000861_070 Hb_000861_070 Hb_003097_190--Hb_000861_070 Hb_010068_030--Hb_000152_560 Hb_000422_140 Hb_000422_140 Hb_010068_030--Hb_000422_140 Hb_010068_030--Hb_002890_030 Hb_002499_070 Hb_002499_070 Hb_010068_030--Hb_002499_070 Hb_000258_130 Hb_000258_130 Hb_010068_030--Hb_000258_130 Hb_001504_160 Hb_001504_160 Hb_012654_010--Hb_001504_160 Hb_000107_100 Hb_000107_100 Hb_012654_010--Hb_000107_100 Hb_000139_250 Hb_000139_250 Hb_012654_010--Hb_000139_250 Hb_012654_010--Hb_001057_010 Hb_005214_160 Hb_005214_160 Hb_012654_010--Hb_005214_160 Hb_002701_080 Hb_002701_080 Hb_012654_010--Hb_002701_080 Hb_000614_080 Hb_000614_080 Hb_000152_560--Hb_000614_080 Hb_000152_890 Hb_000152_890 Hb_000152_560--Hb_000152_890 Hb_029866_130 Hb_029866_130 Hb_000152_560--Hb_029866_130 Hb_000152_560--Hb_001057_010 Hb_000340_510 Hb_000340_510 Hb_001057_010--Hb_000340_510 Hb_005237_010 Hb_005237_010 Hb_001057_010--Hb_005237_010 Hb_017168_010 Hb_017168_010 Hb_001057_010--Hb_017168_010 Hb_002942_220 Hb_002942_220 Hb_001057_010--Hb_002942_220 Hb_002890_030--Hb_000861_070 Hb_002890_030--Hb_012654_010 Hb_004204_080 Hb_004204_080 Hb_002890_030--Hb_004204_080 Hb_002890_030--Hb_001057_010 Hb_008643_060 Hb_008643_060 Hb_002890_030--Hb_008643_060 Hb_004724_320 Hb_004724_320 Hb_000861_070--Hb_004724_320 Hb_075481_030 Hb_075481_030 Hb_000861_070--Hb_075481_030 Hb_000521_260 Hb_000521_260 Hb_000861_070--Hb_000521_260 Hb_000008_330 Hb_000008_330 Hb_000861_070--Hb_000008_330 Hb_004162_280 Hb_004162_280 Hb_000861_070--Hb_004162_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.45241 4.38514 1.49669 1.37405 12.4914 6.24188
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.45296 3.81728 3.87799 2.25158 0.932466

CAGE analysis